Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2190
         (391 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474...    83   8e-17
03_02_0698 - 10496316-10498127,10498539-10498559                       28   3.0  
06_01_0287 - 2099008-2099023,2099441-2099472,2099776-2099814,209...    26   9.2  
05_03_0370 + 13144612-13144639,13144749-13145260,13146995-131473...    26   9.2  

>01_06_1177 +
           35147036-35147038,35147128-35147220,35147322-35147406,
           35147588-35147760
          Length = 117

 Score = 83.0 bits (196), Expect = 8e-17
 Identities = 35/66 (53%), Positives = 50/66 (75%)
 Frame = +2

Query: 80  CVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQI 259
           C PKDKAIK+F +RNIV  AA+RD+ +A V+  + LPKLYAK+H+CVSCAIH+   + + 
Sbjct: 29  CCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRS 88

Query: 260 EERQKN 277
            E +++
Sbjct: 89  RENRRD 94



 Score = 39.9 bits (89), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +1

Query: 19  GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
           GR KHGRGHVK +RC+ CA+   K +  ++
Sbjct: 9   GRNKHGRGHVKYIRCSNCAKCCPKDKAIKR 38


>03_02_0698 - 10496316-10498127,10498539-10498559
          Length = 610

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 55  VRCTTCARVRAKGQGYQKVRD*EHRXSGGGQR 150
           +R T   R+R +GQG     D E   SGGG+R
Sbjct: 104 LRSTFVGRLRHRGQGQAASGDDEEVDSGGGRR 135


>06_01_0287 -
           2099008-2099023,2099441-2099472,2099776-2099814,
           2099916-2099967,2100100-2100164,2100238-2100321,
           2101144-2101191,2101272-2101392,2101809-2101911,
           2102456-2102537,2102670-2102717,2102993-2103129,
           2103225-2103313,2104206-2104327
          Length = 345

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 172 VYRGIVNISDRRRXYDVPNHELFDSLVLWHAPARRLCIS 56
           +Y   ++  +RRR   +   ELFD    WH      C++
Sbjct: 288 IYNDFIDSEERRR---IERLELFDEFEEWHMMQEHYCVA 323


>05_03_0370 +
           13144612-13144639,13144749-13145260,13146995-13147327,
           13147690-13147699,13149704-13149816,13151187-13151258,
           13151397-13151432,13151552-13151597,13151726-13151828,
           13151916-13151973,13152231-13152281
          Length = 453

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 208 PLLRVMRHPQQKLSGTDRR 264
           PLLRV   P+Q++ G  RR
Sbjct: 183 PLLRVSEQPEQRVDGLQRR 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,489,809
Number of Sequences: 37544
Number of extensions: 201525
Number of successful extensions: 460
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)