Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2190
         (391 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein ...   105   4e-25
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             22   6.9  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    22   9.1  
AF317817-1|AAL18436.1|  137|Anopheles gambiae glucose-6-phosphat...    22   9.1  

>AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein S26
           protein.
          Length = 114

 Score =  105 bits (253), Expect = 4e-25
 Identities = 49/65 (75%), Positives = 56/65 (86%)
 Frame = +2

Query: 80  CVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQI 259
           CVPKDKAIKKFVIRNIV AAAVRDI+DASVY  + LPKLYAKLHYCVSCAIHSK  + + 
Sbjct: 28  CVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIHSKVVRNRS 87

Query: 260 EERQK 274
           +E ++
Sbjct: 88  KETRR 92



 Score = 53.2 bits (122), Expect = 3e-09
 Identities = 23/34 (67%), Positives = 29/34 (85%)
 Frame = +3

Query: 237 AKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 338
           +KVVRNRSK+ RRIRTPP+ +FP+DM+R Q  QR
Sbjct: 80  SKVVRNRSKETRRIRTPPQRSFPKDMNRQQNAQR 113



 Score = 45.2 bits (102), Expect = 9e-07
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +1

Query: 19  GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
           GR KH RGHVKAVRCT CAR   K +  +K
Sbjct: 8   GRCKHNRGHVKAVRCTNCARCVPKDKAIKK 37


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 268 TEESVLLPRVTSLGTCHVHRQ 330
           T+ S+  PR+T   T HV+ +
Sbjct: 176 TDGSIFPPRITKNSTLHVYEK 196


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 120 LITNFLIALSFGTHPRAGCASHSF 49
           L+T +L++L+FG   R    S  F
Sbjct: 11  LVTTYLLSLAFGQSSRVVTQSKCF 34


>AF317817-1|AAL18436.1|  137|Anopheles gambiae glucose-6-phosphate
           dehydrogenase protein.
          Length = 137

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 8   PYGRDAPSMDVVTLKL 55
           P+GRDA S +V+++ L
Sbjct: 115 PFGRDAQSSNVLSVHL 130


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 380,186
Number of Sequences: 2352
Number of extensions: 7282
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 30356973
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)