Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2190
         (391 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal prot...   101   4e-22
X13625-1|CAB38441.1|  114|Drosophila melanogaster protein ( Dros...   101   4e-22
AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p pro...   101   4e-22
AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-P...   101   4e-22
AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-P...   101   4e-22
AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-P...   101   4e-22
AY119641-1|AAM50295.1|  581|Drosophila melanogaster RE44178p pro...    27   6.6  
AL031583-1|CAA20896.1|  526|Drosophila melanogaster EG:34F3.6 pr...    27   6.6  
AF195242-1|AAF63250.1|  581|Drosophila melanogaster FRIZZLED 3 p...    27   6.6  
AE014298-105|AAF45547.1|  581|Drosophila melanogaster CG16785-PA...    27   6.6  
AB018565-1|BAA84677.1|  581|Drosophila melanogaster Dfrizzled-3 ...    27   6.6  
BT021222-1|AAX33370.1|  822|Drosophila melanogaster RH55640p pro...    27   8.7  
BT011372-1|AAR96164.1|  330|Drosophila melanogaster RE53936p pro...    27   8.7  
BT011126-1|AAR82793.1|  208|Drosophila melanogaster LD08644p pro...    27   8.7  
AE014134-2947|AAF53680.2|  822|Drosophila melanogaster CG10333-P...    27   8.7  

>X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal protein
           S31 protein.
          Length = 114

 Score =  101 bits (241), Expect = 4e-22
 Identities = 46/65 (70%), Positives = 54/65 (83%)
 Frame = +2

Query: 80  CVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQI 259
           CVPKDKAIKKFVIRNIV AAAVRDI +AS++  + LPKLYAKLHYCVSCAIHSK  + + 
Sbjct: 29  CVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVVRNRS 88

Query: 260 EERQK 274
            E ++
Sbjct: 89  REARR 93



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/28 (67%), Positives = 25/28 (89%)
 Frame = +3

Query: 237 AKVVRNRSKKDRRIRTPPKSNFPRDMSR 320
           +KVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 81  SKVVRNRSREARRIRTPPLRSFPKDMAR 108



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +1

Query: 19  GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
           GR KH RGHVK VRCT CAR   K +  +K
Sbjct: 9   GRNKHNRGHVKPVRCTNCARCVPKDKAIKK 38


>X13625-1|CAB38441.1|  114|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for putative ribosomal
           protein S31. ).
          Length = 114

 Score =  101 bits (241), Expect = 4e-22
 Identities = 46/65 (70%), Positives = 54/65 (83%)
 Frame = +2

Query: 80  CVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQI 259
           CVPKDKAIKKFVIRNIV AAAVRDI +AS++  + LPKLYAKLHYCVSCAIHSK  + + 
Sbjct: 29  CVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVVRNRS 88

Query: 260 EERQK 274
            E ++
Sbjct: 89  REARR 93



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/28 (67%), Positives = 25/28 (89%)
 Frame = +3

Query: 237 AKVVRNRSKKDRRIRTPPKSNFPRDMSR 320
           +KVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 81  SKVVRNRSREARRIRTPPLRSFPKDMAR 108



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +1

Query: 19  GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
           GR KH RGHVK VRCT CAR   K +  +K
Sbjct: 9   GRNKHNRGHVKPVRCTNCARCVPKDKAIKK 38


>AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p
           protein.
          Length = 114

 Score =  101 bits (241), Expect = 4e-22
 Identities = 46/65 (70%), Positives = 54/65 (83%)
 Frame = +2

Query: 80  CVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQI 259
           CVPKDKAIKKFVIRNIV AAAVRDI +AS++  + LPKLYAKLHYCVSCAIHSK  + + 
Sbjct: 29  CVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVVRNRS 88

Query: 260 EERQK 274
            E ++
Sbjct: 89  REARR 93



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/28 (67%), Positives = 25/28 (89%)
 Frame = +3

Query: 237 AKVVRNRSKKDRRIRTPPKSNFPRDMSR 320
           +KVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 81  SKVVRNRSREARRIRTPPLRSFPKDMAR 108



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +1

Query: 19  GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
           GR KH RGHVK VRCT CAR   K +  +K
Sbjct: 9   GRNKHNRGHVKPVRCTNCARCVPKDKAIKK 38


>AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-PC,
           isoform C protein.
          Length = 114

 Score =  101 bits (241), Expect = 4e-22
 Identities = 46/65 (70%), Positives = 54/65 (83%)
 Frame = +2

Query: 80  CVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQI 259
           CVPKDKAIKKFVIRNIV AAAVRDI +AS++  + LPKLYAKLHYCVSCAIHSK  + + 
Sbjct: 29  CVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVVRNRS 88

Query: 260 EERQK 274
            E ++
Sbjct: 89  REARR 93



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/28 (67%), Positives = 25/28 (89%)
 Frame = +3

Query: 237 AKVVRNRSKKDRRIRTPPKSNFPRDMSR 320
           +KVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 81  SKVVRNRSREARRIRTPPLRSFPKDMAR 108



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +1

Query: 19  GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
           GR KH RGHVK VRCT CAR   K +  +K
Sbjct: 9   GRNKHNRGHVKPVRCTNCARCVPKDKAIKK 38


>AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-PB,
           isoform B protein.
          Length = 114

 Score =  101 bits (241), Expect = 4e-22
 Identities = 46/65 (70%), Positives = 54/65 (83%)
 Frame = +2

Query: 80  CVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQI 259
           CVPKDKAIKKFVIRNIV AAAVRDI +AS++  + LPKLYAKLHYCVSCAIHSK  + + 
Sbjct: 29  CVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVVRNRS 88

Query: 260 EERQK 274
            E ++
Sbjct: 89  REARR 93



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/28 (67%), Positives = 25/28 (89%)
 Frame = +3

Query: 237 AKVVRNRSKKDRRIRTPPKSNFPRDMSR 320
           +KVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 81  SKVVRNRSREARRIRTPPLRSFPKDMAR 108



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +1

Query: 19  GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
           GR KH RGHVK VRCT CAR   K +  +K
Sbjct: 9   GRNKHNRGHVKPVRCTNCARCVPKDKAIKK 38


>AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-PA,
           isoform A protein.
          Length = 114

 Score =  101 bits (241), Expect = 4e-22
 Identities = 46/65 (70%), Positives = 54/65 (83%)
 Frame = +2

Query: 80  CVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQI 259
           CVPKDKAIKKFVIRNIV AAAVRDI +AS++  + LPKLYAKLHYCVSCAIHSK  + + 
Sbjct: 29  CVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVVRNRS 88

Query: 260 EERQK 274
            E ++
Sbjct: 89  REARR 93



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/28 (67%), Positives = 25/28 (89%)
 Frame = +3

Query: 237 AKVVRNRSKKDRRIRTPPKSNFPRDMSR 320
           +KVVRNRS++ RRIRTPP  +FP+DM+R
Sbjct: 81  SKVVRNRSREARRIRTPPLRSFPKDMAR 108



 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = +1

Query: 19  GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
           GR KH RGHVK VRCT CAR   K +  +K
Sbjct: 9   GRNKHNRGHVKPVRCTNCARCVPKDKAIKK 38


>AY119641-1|AAM50295.1|  581|Drosophila melanogaster RE44178p
           protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 12  MGGTRQA-WTWSR*SCEMHNLRAGA 83
           +GGT    W WSR +CE +  R GA
Sbjct: 499 VGGTLTGLWVWSRKTCESYRNRLGA 523


>AL031583-1|CAA20896.1|  526|Drosophila melanogaster EG:34F3.6
           protein.
          Length = 526

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 12  MGGTRQA-WTWSR*SCEMHNLRAGA 83
           +GGT    W WSR +CE +  R GA
Sbjct: 444 VGGTLTGLWVWSRKTCESYRNRLGA 468


>AF195242-1|AAF63250.1|  581|Drosophila melanogaster FRIZZLED 3
           protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 12  MGGTRQA-WTWSR*SCEMHNLRAGA 83
           +GGT    W WSR +CE +  R GA
Sbjct: 499 VGGTLTGLWVWSRKTCESYRNRLGA 523


>AE014298-105|AAF45547.1|  581|Drosophila melanogaster CG16785-PA
           protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 12  MGGTRQA-WTWSR*SCEMHNLRAGA 83
           +GGT    W WSR +CE +  R GA
Sbjct: 499 VGGTLTGLWVWSRKTCESYRNRLGA 523


>AB018565-1|BAA84677.1|  581|Drosophila melanogaster Dfrizzled-3
           protein.
          Length = 581

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 12  MGGTRQA-WTWSR*SCEMHNLRAGA 83
           +GGT    W WSR +CE +  R GA
Sbjct: 499 VGGTLTGLWVWSRKTCESYRNRLGA 523


>BT021222-1|AAX33370.1|  822|Drosophila melanogaster RH55640p
           protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 249 RNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 338
           R+RS++DR  R  P+   PRD  R ++ +R
Sbjct: 52  RSRSREDRNRRRSPERQRPRDNVRERSRER 81


>BT011372-1|AAR96164.1|  330|Drosophila melanogaster RE53936p
           protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +1

Query: 205 APLLRVMRHPQQKLSGTDRRKTEESVLLPRVTSLGTCHVHRQCKGSDLLLNK**NXKKKK 384
           A + R+ +    +L   D + TE+ +L  RV + G   VH   K  +  L      + ++
Sbjct: 126 AAMKRLWQDDLDRLGAKDYQPTEQDILRTRVKTTGIVEVHFSFKNLNFKLFDVGGQRSER 185

Query: 385 KK 390
           KK
Sbjct: 186 KK 187


>BT011126-1|AAR82793.1|  208|Drosophila melanogaster LD08644p
           protein.
          Length = 208

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 13  WEGRAKHGRGHVKAVRCTTCARVRAK 90
           W G +   R    A  C TC RVR+K
Sbjct: 170 WTGWSSRSRSASVAPSCATCGRVRSK 195


>AE014134-2947|AAF53680.2|  822|Drosophila melanogaster CG10333-PA
           protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 249 RNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 338
           R+RS++DR  R  P+   PRD  R ++ +R
Sbjct: 52  RSRSREDRNRRRSPERQRPRDNVRERSRER 81


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,750,479
Number of Sequences: 53049
Number of extensions: 319889
Number of successful extensions: 823
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1086986940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)