Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2190
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...    99   5e-22

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =   99 bits (238), Expect = 5e-22
 Identities = 46/69 (66%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
 Frame = +2

Query: 80  CVPKDKAIKKFVIRNIVXAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKSCQEQI 259
           C PKDKAIKKFV+RNIV AAAVRDI DAS Y  + LPKLY KLHYC++CAIHSK  + + 
Sbjct: 29  CCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSKVVRNRS 88

Query: 260 EE--RQKNP 280
            E  R +NP
Sbjct: 89  REARRDRNP 97



 Score = 33.9 bits (74), Expect = 0.041
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 19  GRAKHGRGHVKAVRCTTCARVRAKGQGYQK 108
           GR K  RGHV  +RCT C R   K +  +K
Sbjct: 9   GRNKKNRGHVAFIRCTNCGRCCPKDKAIKK 38



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +3

Query: 237 AKVVRNRSKKDRRIRTPP 290
           +KVVRNRS++ RR R PP
Sbjct: 81  SKVVRNRSREARRDRNPP 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,188,567
Number of Sequences: 27780
Number of extensions: 148079
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)