Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2189
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    24   0.96 
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    24   0.96 
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   1.7  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   6.8  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   9.0  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   9.0  

>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 207 PSGFFPASASTSPGLRPSVRMY 142
           PSG  P  +S+S    P+ RMY
Sbjct: 40  PSGSSPQHSSSSASTSPAARMY 61


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 207 PSGFFPASASTSPGLRPSVRMY 142
           PSG  P  +S+S    P+ RMY
Sbjct: 40  PSGSSPQHSSSSASTSPAARMY 61


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +1

Query: 328 FVNKINGKITWKLPAN*GLTPESSHLTETSRCPS 429
           F N+ +G I W LP    +        + S CPS
Sbjct: 216 FDNQCSGTIDWALPNKRTVFIRKGGTAKASMCPS 249


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 267 PLFKLHEIKSFFKLT 311
           P FKL +I+SF  +T
Sbjct: 34  PSFKLSKIRSFLNIT 48


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 285 EIKSFFKLTQPKIAFCQQNQR 347
           E  S  +LT+P++    QN+R
Sbjct: 147 EFSSSLRLTEPQVKIWFQNRR 167


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +1

Query: 1   DDPQYHMGHLFMDCMRRRPDSVCQIDAATGETE 99
           DDP   MGH     M  +P    Q   A GE E
Sbjct: 2   DDPGRMMGHTGGGLMPPQPYMNAQDAPAGGENE 34


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,159
Number of Sequences: 336
Number of extensions: 2548
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)