Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2189
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   5.5  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.5  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   7.3  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    25   9.7  

>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 108 VSTTAVCAG*PSTCGRSVLSRGMYWHWRGRTHLDLY 215
           + T+A  A      G S  S G+YW W   T  D Y
Sbjct: 329 IQTSAAAAAKQCCGGYSGTSCGIYWFWNNGTWDDNY 364


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 167 PGDVLALAGKNPLGSLYTILCCLNEWISYNRR 262
           P DV+AL+  NP G++Y     L+   S   R
Sbjct: 441 PADVIALSSPNPNGAIYIETAALDGETSLKTR 472


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
 Frame = +3

Query: 147 CGRSVLSRGMYWH---WRGRTHLDLYIPYYAALMNGYPITG--VDPLFKLHEIKSFFKLT 311
           C RS+LS    WH   +   THL  +I ++A L   YP +   V        ++ FF L+
Sbjct: 197 CFRSILS----WHNETFNIWTHLSAFIVFFAVLAYFYPSSSSWVSSNVSNRIVRIFFLLS 252

Query: 312 QPKIAFC 332
             K   C
Sbjct: 253 AMKCLGC 259


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 204 LDLYIPYYAALMNGYP---ITGVDPLFKLHEIK 293
           LDL +  Y+ ++NGY    +T +D L  L EIK
Sbjct: 319 LDLVVVKYSTMINGYTSLNLTKLDILDALDEIK 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,287
Number of Sequences: 5004
Number of extensions: 43615
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)