Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2189
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-6|CAA90358.1|  223|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U56961-1|AAK39295.1|  118|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF022971-4|AAG23982.2|  579|Caenorhabditis elegans Hypothetical ...    27   8.9  
AB007815-1|BAA28351.1|  579|Caenorhabditis elegans matrix metall...    27   8.9  

>Z50044-6|CAA90358.1|  223|Caenorhabditis elegans Hypothetical
           protein F22B5.6 protein.
          Length = 223

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 194 KNPLGSL-YTILCCLNEWISYNRRRS 268
           KNP G+  Y   CCL+ WIS  +R S
Sbjct: 2   KNPYGTFAYVNSCCLSTWISQKKRPS 27


>U56961-1|AAK39295.1|  118|Caenorhabditis elegans Hypothetical
           protein T19D7.3 protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 131 GLAKYMRTLGLKPGDVLALAGKNPLGSL 214
           GL KY++T+   P + LA   KNPL S+
Sbjct: 58  GLMKYLQTVQKNPDNTLAKKLKNPLPSM 85


>AF022971-4|AAG23982.2|  579|Caenorhabditis elegans Hypothetical
           protein C31B8.8 protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 110 DAFVSV-SPVAASIWHTESGRLLMQSINRCPMWY 12
           D F S  +PV A++W+  SG +L+ S NR   +Y
Sbjct: 432 DLFPSAPTPVNAALWNPISGSMLLFSSNRVYSYY 465


>AB007815-1|BAA28351.1|  579|Caenorhabditis elegans matrix
           metalloproteinase protein.
          Length = 579

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 110 DAFVSV-SPVAASIWHTESGRLLMQSINRCPMWY 12
           D F S  +PV A++W+  SG +L+ S NR   +Y
Sbjct: 432 DLFPSAPTPVNAALWNPISGSMLLFSSNRVYSYY 465


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,550
Number of Sequences: 27780
Number of extensions: 242091
Number of successful extensions: 554
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)