Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2188
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   1.7  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    21   6.8  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    21   6.8  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   9.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   9.0  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +1

Query: 70  KDEGQDEHNIRKQEEVLQESLMMVPDCQR 156
           K +G+D+  + ++E VL  ++   PD ++
Sbjct: 77  KIDGEDDSGLTEEEVVLSNAIAEGPDAEK 105


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 399 FYFNAKYLLFRYISLCSASRIDTFNNNVII 488
           FYF+     +  +S+ S  RI T  NN ++
Sbjct: 56  FYFSFYITSYTLLSVYSLFRIATNENNSLV 85


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 399 FYFNAKYLLFRYISLCSASRIDTFNNNVII 488
           FYF+     +  +S+ S  RI T  NN ++
Sbjct: 56  FYFSFYITSYTLLSVYSLFRIATNENNSLV 85


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 234 FKL*SSQIVNTCRNWYKHM*VLYKSWIE 317
           FKL +S+I       YK    LY  W E
Sbjct: 209 FKLLTSKIYKVLEEKYKTSGSLYTCWSE 236


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 394  FVFISMQSIYFSVTLAFALHRELIPL 471
            F F+ + S+Y  V     L ++L+ L
Sbjct: 1227 FTFLMLNSLYVIVIFLLTLKKDLLHL 1252


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 394  FVFISMQSIYFSVTLAFALHRELIPL 471
            F F+ + S+Y  V     L ++L+ L
Sbjct: 1227 FTFLMLNSLYVIVIFLLTLKKDLLHL 1252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,708
Number of Sequences: 336
Number of extensions: 2733
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)