Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2188
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.4  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    26   4.2  
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    26   4.2  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    25   9.7  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    25   9.7  

>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 557 NQSIYRSQNYFRNRTGPQRTRGIHY 631
           +Q+I+++  Y  ++TGP R R +HY
Sbjct: 118 HQAIWQTLRYAYSQTGPLRHRRLHY 142


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 276 WYKHM*VLYKSWIEILLPISILKINTINYVFW 371
           WY  +  L+ +W+ IL P   L  +   ++FW
Sbjct: 38  WYYCLTTLFFTWLIILYPRPTLACSVAAWLFW 69


>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 49  KNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPD 147
           + R+Q   D G+D   I  Q+ VL++ L  +PD
Sbjct: 33  EKRVQSKIDNGEDSAEIEHQKFVLKKHLEALPD 65


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 46  QKNRIQRIK-DEGQDEHNIRKQEEVLQESLMMVPD 147
           QK+  +R K D+G +E N  +QE++L   L  + D
Sbjct: 74  QKHATERQKLDKGDEETNETQQEDLLNTLLQQMED 108


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 67  IKDEGQDEHN-IRKQEEVLQESLMMVPDCQRRSVAPF**YYTVKIVEKSRINANFLYSNY 243
           + +E    HN +R  +  L E       C  R + P+     +  +E  R+N  FL S++
Sbjct: 355 VSEELMAVHNQLRTVKRCLLEVQRSGGICSERDLYPY--QMKLASLENLRVNGKFLASDH 412

Query: 244 KVPK 255
            VP+
Sbjct: 413 SVPE 416


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -3

Query: 277 QFRHVLTIWELYS--LNKENLH*FVIFQLFLRYNIIK-MAQLTSFDSLEPSS 131
           QF H      ++   ++ E+   F I Q   ++ + + +A LTSFD LEPSS
Sbjct: 356 QFAHSFLRTPMFDCFISSESFQSFFILQK--QFQLFQDLALLTSFDFLEPSS 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,452
Number of Sequences: 5004
Number of extensions: 41887
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)