Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2187
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.4  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   5.5  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   9.7  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  

>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 165  SWRRYKILKQSHPVKRMIRGIGAETTSTYSQ 257
            S + YK L Q + VK ++  + +ET S+Y++
Sbjct: 1082 SAKNYKSLIQKYKVKSVLSAVDSETASSYAK 1112


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 350  GAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGKSESAKECATTHLPKQPALKMDGAE 529
            G++  TK+S +  KK+  +T +G   S   +G  G+ E  +E      PK+ AL+ +  +
Sbjct: 1234 GSISNTKKSSRTKKKKEEETNRGDETS--PEGTVGEDEVEEEPRQAEPPKR-ALRSNSGK 1290

Query: 530  A 532
            A
Sbjct: 1291 A 1291


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 260 FKWVRTPAYSNDEAGDL 310
           F  ++ P YS D+AGDL
Sbjct: 443 FSALKVPVYSTDDAGDL 459


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -1

Query: 204 PDETVLKFYIDASYPEGNFGRNQL------LDGSISLSPLYPVPTIDLHVRIATVLHQG 46
           P+E V+    +A YP  NF    +      LD  IS+S   P     ++   AT  +QG
Sbjct: 49  PEEMVIMLVNNAHYPNQNFNLGTVQSSAGSLDTDISISSDLPTDGWQIYFNGATSQNQG 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,251
Number of Sequences: 5004
Number of extensions: 61295
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)