Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2187
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0881 + 20528257-20528760,20528837-20529283                       32   0.35 
05_07_0182 + 28243881-28245406,28245460-28245505,28246309-282464...    32   0.47 
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    28   5.7  
01_01_0894 + 7047273-7048277,7049124-7049549                           28   5.7  
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    28   7.6  
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501...    28   7.6  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   7.6  

>04_03_0881 + 20528257-20528760,20528837-20529283
          Length = 316

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 588 YQIKNLASHVPVTVVYRQNASAPSIFRAGCFGR*VVAHSLADSDFPWPPSCCHERPTPF 412
           Y+++++    P T     ++S+P      C GR  + +  A S +PW PSC H R + F
Sbjct: 11  YKLRDVHHRAPPTPTSPSSSSSPH-----CHGRHQLCYPPAPSSWPW-PSCRHPRTSSF 63


>05_07_0182 +
           28243881-28245406,28245460-28245505,28246309-28246400,
           28246513-28246635,28246753-28246984
          Length = 672

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = -1

Query: 456 FPWPPSCCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKIG 328
           FP PP+  H  P P       FLGA +L L+HP  P+ L + G
Sbjct: 10  FPSPPATLHHHPPP---PKSLFLGA-SLPLLHPPPPLRLLRPG 48


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 341 LPKLAHLAPSSDLRLHRSSKPEFSPI 264
           L  L +LAP  DLR+  SSKP F  I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284


>01_01_0894 + 7047273-7048277,7049124-7049549
          Length = 476

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -1

Query: 453 PWPPSCCHERPTPFMVSHERFLGALTLRLVHPTA----PVLLTKIGPLGTVIRSPASSFE 286
           P PPS    R  PF+  H   LG+L  R +   A    PV+L   G + TV+ S A+S +
Sbjct: 47  PLPPS---PRGVPFL-GHLPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSAASAQ 102

Query: 285 *AGVLTHLKFENRLR 241
            A       F +R R
Sbjct: 103 EAMRARDAAFASRAR 117


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 80  KSIVGTGYRGERLIEPSSSWFRPKFPSG 163
           + + GTG      + PSS+WF P+  SG
Sbjct: 12  RCVFGTGPLPPASLSPSSAWFDPELSSG 39


>04_03_0897 -
           20646750-20646918,20647927-20648038,20649650-20650108,
           20650237-20650330,20650449-20650525,20650637-20650688,
           20650770-20650927,20651191-20651281,20651465-20652529
          Length = 758

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +1

Query: 7   DGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 117
           DG+  +V + SGE    D+S  ++Q+D+  ++ G+K+
Sbjct: 436 DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 261 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 100
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,870,957
Number of Sequences: 37544
Number of extensions: 452236
Number of successful extensions: 949
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)