Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2182
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    26   4.5  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   6.0  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   6.0  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   7.9  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 469 STVTSTNGPTNPLIQMVTNLXNSFLSRNG*SHSSNQQLELEPSME 603
           S V S   P+N ++ + TNL N   S+N  S +   Q+     +E
Sbjct: 414 SNVDSDEIPSNVMLSVCTNLINEVASQNKYSSTEISQITTNREVE 458


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +1

Query: 55  IVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKL-N 231
           ++SS  N   + + A   G +++ D +       EQ+  L    +   E FG ++Q++  
Sbjct: 1   MISSFSNGFWSKDYAT--GVKKLFDCLDNGVEENEQVKNLLKLYKEANEEFGEKLQEITK 58

Query: 232 ETLHFIKPADTIAAPSVEETQNKASFETIES 324
           E L   KP +T        T NKA FE + S
Sbjct: 59  ECLKGKKPENT----EDGATSNKA-FEGLRS 84


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 154 TEQINELQASLQHFQENFGAQIQKLNETL 240
           + ++N+LQ   ++ +  F  QI+KLN  +
Sbjct: 111 SHEVNDLQTDRENLKHQFEDQIEKLNSEI 139


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 100 LRQGFQEVSDGIGKWYARTEQINELQASLQHFQENFGAQIQKLNETLHFIK 252
           + Q   E+ D + K     ++IN +  + + F+E    +  KLN+ L +I+
Sbjct: 9   MEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFLSYIQ 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,611
Number of Sequences: 5004
Number of extensions: 44683
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)