Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2182
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903     31   0.88 
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466...    29   2.7  
10_08_0520 - 18495118-18498237                                         28   8.2  

>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
          Length = 1135

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +1

Query: 568 SNQQLELEPSMECSKYFLAELALQPLSQMFK 660
           SN+ L L+ S ECS+ FL+ L L+P S+ FK
Sbjct: 748 SNRSLSLD-SEECSENFLSALHLEPCSEDFK 777


>01_07_0374 +
           43144861-43144998,43145695-43145794,43146499-43146651,
           43147383-43150081
          Length = 1029

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 130 GIGKWYARTEQINELQASLQHFQENF 207
           GI K++   +QIN++Q  + HFQ+ F
Sbjct: 292 GIAKYWDLEKQINDMQEQVCHFQDKF 317


>10_08_0520 - 18495118-18498237
          Length = 1039

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 73  NDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASL 186
           +D+N + + LR+G + + D +  W A  E  NE  A L
Sbjct: 476 SDLNKSRV-LRKGLEHIPDSVRLWKAVVELANEEDARL 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,832,667
Number of Sequences: 37544
Number of extensions: 286278
Number of successful extensions: 679
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)