Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2178
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0105 - 836347-836769,837740-837937                              177   7e-45
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...   175   3e-44

>03_01_0105 - 836347-836769,837740-837937
          Length = 206

 Score =  177 bits (430), Expect = 7e-45
 Identities = 85/168 (50%), Positives = 115/168 (68%)
 Frame = +1

Query: 1   RYTPLKESWLKILPRLLNTYCYK*GFNTKTRNVEIKVGPEXKDIANLQKAADFVKAFIYG 180
           R+ PLK++W+ I   +          N K R VE+K   +  D++NLQK ADFV AF+ G
Sbjct: 38  RFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTPDVSNLQKCADFVHAFMLG 97

Query: 181 FEVXXXXXXXXXXXXFVESFEVKDVKPLNGDHLSRAIGRLAGKAGRTKFTIENVTKTRIV 360
           F++            +V+SFE+KDVK L G+HLSRAIGRL+GK G+TK+ IEN T+TRIV
Sbjct: 98  FDIADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIV 157

Query: 361 LADSKIHILGSYQNIALARRAICNLIMGSPPSKVTGILRNVATRVAER 504
           +AD+KIHILGS+ NI +AR ++C+LI+GSP  KV   LR V+ R+AER
Sbjct: 158 IADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSARLAER 205


>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score =  175 bits (425), Expect = 3e-44
 Identities = 84/167 (50%), Positives = 114/167 (68%)
 Frame = +1

Query: 1   RYTPLKESWLKILPRLLNTYCYK*GFNTKTRNVEIKVGPEXKDIANLQKAADFVKAFIYG 180
           R+ PLK++W+ I   +          N K R VE+K   +  D++NLQK ADFV AF+ G
Sbjct: 52  RFAPLKKAWMDIYTPVYEHMKIDIRMNLKARRVELKTRQDTPDVSNLQKCADFVHAFMLG 111

Query: 181 FEVXXXXXXXXXXXXFVESFEVKDVKPLNGDHLSRAIGRLAGKAGRTKFTIENVTKTRIV 360
           F++            +V+SFE+KDVK L G+HLSRAIGRL+GK G+TK+ IEN T+TRIV
Sbjct: 112 FDIADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIV 171

Query: 361 LADSKIHILGSYQNIALARRAICNLIMGSPPSKVTGILRNVATRVAE 501
           +AD+KIHILGS+ NI +AR ++C+LI+GSP  KV   LR V+ R+AE
Sbjct: 172 IADTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSARLAE 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,763,932
Number of Sequences: 37544
Number of extensions: 190327
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)