Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2178
         (569 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061304-1|AAL28852.1|  240|Drosophila melanogaster LD21667p pro...   227   6e-60
AF188892-1|AAG17061.1|  240|Drosophila melanogaster potential RN...   227   6e-60
AE014298-3008|AAF50915.1|  240|Drosophila melanogaster CG11738-P...   227   6e-60

>AY061304-1|AAL28852.1|  240|Drosophila melanogaster LD21667p
           protein.
          Length = 240

 Score =  227 bits (556), Expect = 6e-60
 Identities = 113/169 (66%), Positives = 130/169 (76%)
 Frame = +1

Query: 1   RYTPLKESWLKILPRLLNTYCYK*GFNTKTRNVEIKVGPEXKDIANLQKAADFVKAFIYG 180
           RY+ LKE W+KI   ++     +  FN K R VE++VGPE  DIANLQ+ ADFV+AF+ G
Sbjct: 72  RYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQRGADFVRAFLCG 131

Query: 181 FEVXXXXXXXXXXXXFVESFEVKDVKPLNGDHLSRAIGRLAGKAGRTKFTIENVTKTRIV 360
           FEV            FVESFE+KDVK L GDH SRAIGRLAGK GRTKFTIENVTKTRIV
Sbjct: 132 FEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFTIENVTKTRIV 191

Query: 361 LADSKIHILGSYQNIALARRAICNLIMGSPPSKVTGILRNVATRVAERI 507
           LADSKIHILGSYQNI LARRA+CNLI+GSPPSKV G LR VA+R++ER+
Sbjct: 192 LADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAVASRLSERM 240


>AF188892-1|AAG17061.1|  240|Drosophila melanogaster potential
           RNA-binding protein protein.
          Length = 240

 Score =  227 bits (556), Expect = 6e-60
 Identities = 113/169 (66%), Positives = 130/169 (76%)
 Frame = +1

Query: 1   RYTPLKESWLKILPRLLNTYCYK*GFNTKTRNVEIKVGPEXKDIANLQKAADFVKAFIYG 180
           RY+ LKE W+KI   ++     +  FN K R VE++VGPE  DIANLQ+ ADFV+AF+ G
Sbjct: 72  RYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQRGADFVRAFLCG 131

Query: 181 FEVXXXXXXXXXXXXFVESFEVKDVKPLNGDHLSRAIGRLAGKAGRTKFTIENVTKTRIV 360
           FEV            FVESFE+KDVK L GDH SRAIGRLAGK GRTKFTIENVTKTRIV
Sbjct: 132 FEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFTIENVTKTRIV 191

Query: 361 LADSKIHILGSYQNIALARRAICNLIMGSPPSKVTGILRNVATRVAERI 507
           LADSKIHILGSYQNI LARRA+CNLI+GSPPSKV G LR VA+R++ER+
Sbjct: 192 LADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAVASRLSERM 240


>AE014298-3008|AAF50915.1|  240|Drosophila melanogaster CG11738-PA
           protein.
          Length = 240

 Score =  227 bits (556), Expect = 6e-60
 Identities = 113/169 (66%), Positives = 130/169 (76%)
 Frame = +1

Query: 1   RYTPLKESWLKILPRLLNTYCYK*GFNTKTRNVEIKVGPEXKDIANLQKAADFVKAFIYG 180
           RY+ LKE W+KI   ++     +  FN K R VE++VGPE  DIANLQ+ ADFV+AF+ G
Sbjct: 72  RYSSLKEHWMKIFTPVVEHMKLQIRFNMKARQVELRVGPETPDIANLQRGADFVRAFLCG 131

Query: 181 FEVXXXXXXXXXXXXFVESFEVKDVKPLNGDHLSRAIGRLAGKAGRTKFTIENVTKTRIV 360
           FEV            FVESFE+KDVK L GDH SRAIGRLAGK GRTKFTIENVTKTRIV
Sbjct: 132 FEVDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFTIENVTKTRIV 191

Query: 361 LADSKIHILGSYQNIALARRAICNLIMGSPPSKVTGILRNVATRVAERI 507
           LADSKIHILGSYQNI LARRA+CNLI+GSPPSKV G LR VA+R++ER+
Sbjct: 192 LADSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAVASRLSERM 240


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,218,024
Number of Sequences: 53049
Number of extensions: 341696
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)