Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2178
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99278-2|CAB16491.1|  277|Caenorhabditis elegans Hypothetical pr...   191   3e-49
Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>Z99278-2|CAB16491.1|  277|Caenorhabditis elegans Hypothetical
           protein Y53C12B.2 protein.
          Length = 277

 Score =  191 bits (465), Expect = 3e-49
 Identities = 96/170 (56%), Positives = 122/170 (71%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   RYTPLKESWLKILPRLLNTYCYK*GFNTKTRNVEIKVGPEXKDIANLQKAADFVKAFIYG 180
           RYTPLK++W+ I   ++     +  FN K R VEI+   + +D  +LQKA DFV+AFI G
Sbjct: 108 RYTPLKDNWVNIFTPIVKNLGLQVRFNLKKRQVEIRNPVDREDTTDLQKATDFVRAFILG 167

Query: 181 FEVXXXXXXXXXXXXFVESFEVKDVK-PLNGDHLSRAIGRLAGKAGRTKFTIENVTKTRI 357
           FEV            F+E+FEV DVK  L GDH+SRAIGR+AGK GRTK  IEN TKTRI
Sbjct: 168 FEVNDAIALIRLDHLFLETFEVADVKHSLKGDHVSRAIGRIAGKDGRTKLVIENTTKTRI 227

Query: 358 VLADSKIHILGSYQNIALARRAICNLIMGSPPSKVTGILRNVATRVAERI 507
           V+A++KIHILG+YQN+ LAR A+C+LI+GS PSKV G LRN+A+R AER+
Sbjct: 228 VVANTKIHILGAYQNLKLARNAVCSLILGSNPSKVYGSLRNMASRGAERL 277


>Z66565-5|CAA91482.2|  766|Caenorhabditis elegans Hypothetical
           protein T04F8.6 protein.
          Length = 766

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 229 VESFEVKDVKP--LNGDHLSRAIGRLAGKAGRTKFTIENVTKT-RIVLADSKIHILGS 393
           V++  V+D  P  +N DHL   +GRL  +    +  +  +T    + L  S+ H++ S
Sbjct: 654 VKNMTVEDPVPTIMNHDHLHTEVGRLKARLTSVRCKVAEITAVMALPLTSSRHHLMPS 711


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,781,235
Number of Sequences: 27780
Number of extensions: 189793
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)