Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2177
         (380 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I4X6 Cluster: Putative uncharacterized protein; n=3; ...    32   4.2  
UniRef50_Q8I3U8 Cluster: Putative uncharacterized protein PFE080...    32   4.2  

>UniRef50_Q8I4X6 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 475

 Score = 31.9 bits (69), Expect = 4.2
 Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 378 FFFFFKGF-YDLVSKTFKSCLILMYIHIFM 292
           FFFFFKG  Y  ++K + +CL ++Y +I +
Sbjct: 7   FFFFFKGQRYKRITKKYDTCLYIIYEYILL 36


>UniRef50_Q8I3U8 Cluster: Putative uncharacterized protein PFE0800w;
           n=3; Plasmodium|Rep: Putative uncharacterized protein
           PFE0800w - Plasmodium falciparum (isolate 3D7)
          Length = 1084

 Score = 31.9 bits (69), Expect = 4.2
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +1

Query: 268 ISLHNIIFHKNMNIH*N-KT*LKGLRYQVIKSLKKKKK 378
           ++ +N++F  N+  H N K  ++ L Y+VIK L KKKK
Sbjct: 381 LTYNNLVFTLNLLDHLNMKNMMRDLSYEVIKMLNKKKK 418


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 320,926,820
Number of Sequences: 1657284
Number of extensions: 5240857
Number of successful extensions: 8471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8467
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14868845845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)