Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2177
         (380 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    25   5.3  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    24   7.0  
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    24   9.3  

>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 173 WSFTEIFSVDFFGGTREGTASAFVHFHRY 87
           WS TEI    F+     G   AF+ + RY
Sbjct: 110 WSITEIIRYAFYAFNLNGDIPAFLTWLRY 138


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 154 FQWTFLEEPEKVRPA 110
           F WT+ EEP K R A
Sbjct: 29  FYWTYTEEPHKSRRA 43


>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 156 FFSGLFWRNP 127
           +FSG FWR+P
Sbjct: 168 YFSGFFWRHP 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,408,160
Number of Sequences: 5004
Number of extensions: 24515
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)