Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2173
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386     28   6.1  
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967...    28   8.0  

>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
          Length = 871

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 414 SYDSDET*YRYCWHCRESFRHTTRVVSRNLCFS 316
           SY +D T + YC  C+ SF+++   V+RNL  S
Sbjct: 297 SYATD-TFWTYCDSCQMSFQYSREYVNRNLACS 328


>01_03_0284 -
           14595643-14595663,14595978-14596018,14596379-14596732,
           14597023-14597494,14597524-14600001
          Length = 1121

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +3

Query: 132 RPK*LYF--YNNLTYLEHTIILPSEMSILF 215
           +PK L+   Y NLTY ++ + LP E+SIL+
Sbjct: 592 QPKHLHHLRYLNLTYSQNMVRLPEEISILY 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,338,723
Number of Sequences: 37544
Number of extensions: 290987
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)