Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2171
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    28   1.3  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    26   4.1  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   4.1  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   7.2  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   7.2  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    25   9.5  

>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 199 NNTIAGALTYPTRSQDEVLPNQPRQPRNLQGLL 297
           ++TI+   + PT+ ++ V PN P  P + Q LL
Sbjct: 7   SSTISPTFSTPTKKRNLVFPNSPITPLHQQALL 39


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 168 FLKDEFE*YAE*HDCRSPDLS-DKKSR*SPTKSA 266
           F K+  + YAE HDC S     D   + +PTKSA
Sbjct: 369 FKKEADQDYAESHDCSSTTSQVDTLGKLAPTKSA 402


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +2

Query: 350 LGPIDDERRKF--LEDALKSLTVNIAEVLLNAIRILTNTERIRSIQFGEPLPEDVQAAFD 523
           L P+  E  +   + D L SL+      + N +R L  T+      F E  PE+V     
Sbjct: 32  LNPLSHENNRIDLIRDLLASLSKEGVVAVYNHVRSLLFTD------FTEVFPEEVSLRVF 85

Query: 524 NVLELLTILIQQMTSXRW 577
           + L+ L +   ++ S RW
Sbjct: 86  SYLDQLDLCKCKLMSKRW 103


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 395 LKSLTVNIAEVLLNAIRILTNTERI---RSIQFGEPLPEDVQAAFD 523
           ++++ ++I E+ +  IRIL+  ER+   RSI  G P    V   +D
Sbjct: 125 MRAIFLSIDEISMICIRILSAEERLKTGRSIDSGFPFSFPVHLIYD 170


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 437 RSVTLQQCSLSDSLGRLQGICVF 369
           +S++     L+DS+ +L GIC+F
Sbjct: 580 KSISASLRDLNDSISKLDGICMF 602


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 239 LLVG*VRAPAIVLFCVLFELIF 174
           LL+  +  PAI+L+ ++F LIF
Sbjct: 379 LLMNKIMFPAIILYLIMFYLIF 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,877
Number of Sequences: 5004
Number of extensions: 49775
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)