Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2171
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical pr...    31   0.71 
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    31   0.71 
U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical pr...    31   0.71 
Z81102-2|CAB03203.1|  313|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    28   6.6  
AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical...    28   6.6  

>Z78018-6|CAK12558.1|  346|Caenorhabditis elegans Hypothetical
           protein W07G4.5b protein.
          Length = 346

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +2

Query: 338 GNSELGPIDDERRKFLEDALKSLTVNIAEVL-LNAIRILTNTERIRSIQFGEPLPEDVQA 514
           GNS L  +DD+ R  L+  +  +      +L +  IRI  N +R+   + G  LP D+++
Sbjct: 92  GNSILN-VDDDVRLELDLPISDIRAMHERILKMGEIRISQNCQRLPMKKVGRTLPLDMES 150

Query: 515 AFDNVLELLT 544
             D+ + LLT
Sbjct: 151 YDDDNMWLLT 160


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +2

Query: 338 GNSELGPIDDERRKFLEDALKSLTVNIAEVL-LNAIRILTNTERIRSIQFGEPLPEDVQA 514
           GNS L  +DD+ R  L+  +  +      +L +  IRI  N +R+   + G  LP D+++
Sbjct: 144 GNSILN-VDDDVRLELDLPISDIRAMHERILKMGEIRISQNCQRLPMKKVGRTLPLDMES 202

Query: 515 AFDNVLELLT 544
             D+ + LLT
Sbjct: 203 YDDDNMWLLT 212


>U49830-2|AAV58878.1|  324|Caenorhabditis elegans Hypothetical
           protein C33F10.4b protein.
          Length = 324

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 627 DLXISLPKHIGNIANPPHLXE--VICCINIVNNSRTLSKAACTSSGS 493
           D  IS+P+   +I N P++ E  ++ CI   ++   L KA+C   G+
Sbjct: 214 DTVISVPQVFKSILNVPNVQEDHIVMCIPSTSSDNILVKASCAKDGT 260


>Z81102-2|CAB03203.1|  313|Caenorhabditis elegans Hypothetical
           protein M02B1.4 protein.
          Length = 313

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 420 LKCY*TPSEFSPILKGFVAYSLGNHYQKTYRRLLTMSL 533
           L  Y  P+ F P+L G  A+ +GN +    + L+ +S+
Sbjct: 176 LSDYGAPNYFMPVLVGLTAHLIGNRFDNNRKALVGLSV 213


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
 Frame = -2

Query: 358 WSQFRVP---WCIFSFCGFHCKPVKVLAGFLAASADLVGL 248
           W  F  P   WCI  F GFH       A   A  A L GL
Sbjct: 260 WRFFNRPSGGWCIRVFTGFHAAKADAEAACQAVGATLSGL 299


>AC025721-10|AAK29908.2| 1019|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.1 protein.
          Length = 1019

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 398 LGRLQGICVFHHQLVPIP 345
           LGRL G+ +++H +VP P
Sbjct: 758 LGRLVGLSIYNHSIVPFP 775


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,058,427
Number of Sequences: 27780
Number of extensions: 275090
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)