Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2167
         (416 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.                50   4e-06
BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36 p...    50   4e-06
BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36 p...    50   4e-06
BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36 p...    50   4e-06
AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36 p...    50   4e-06
AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36 p...    32   0.67 

>CR533465-1|CAG38496.1|  105|Homo sapiens RPL36 protein.
          Length = 105

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +2

Query: 176 EVVGHAQYEKXAMEFLKXSKDRRALKFLKRXIGHTHPR 289
           EV G A YE+ AME LK SKD+RALKF+K+ +G TH R
Sbjct: 46  EVCGFAPYERRAMELLKVSKDKRALKFIKKRVG-THIR 82



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +3

Query: 270 LGTHIRAKRKREDLNTVLAQMRKAXAQ 350
           +GTHIRAKRKRE+L+ VLA MRKA A+
Sbjct: 77  VGTHIRAKRKREELSNVLAAMRKAAAK 103


>BC091508-1|AAH91508.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +2

Query: 176 EVVGHAQYEKXAMEFLKXSKDRRALKFLKRXIGHTHPR 289
           EV G A YE+ AME LK SKD+RALKF+K+ +G TH R
Sbjct: 46  EVCGFAPYERRAMELLKVSKDKRALKFIKKRVG-THIR 82



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +3

Query: 270 LGTHIRAKRKREDLNTVLAQMRKAXAQ 350
           +GTHIRAKRKRE+L+ VLA MRKA A+
Sbjct: 77  VGTHIRAKRKREELSNVLAAMRKAAAK 103


>BC004971-1|AAH04971.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +2

Query: 176 EVVGHAQYEKXAMEFLKXSKDRRALKFLKRXIGHTHPR 289
           EV G A YE+ AME LK SKD+RALKF+K+ +G TH R
Sbjct: 46  EVCGFAPYERRAMELLKVSKDKRALKFIKKRVG-THIR 82



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +3

Query: 270 LGTHIRAKRKREDLNTVLAQMRKAXAQ 350
           +GTHIRAKRKRE+L+ VLA MRKA A+
Sbjct: 77  VGTHIRAKRKREELSNVLAAMRKAAAK 103


>BC003052-1|AAH03052.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +2

Query: 176 EVVGHAQYEKXAMEFLKXSKDRRALKFLKRXIGHTHPR 289
           EV G A YE+ AME LK SKD+RALKF+K+ +G TH R
Sbjct: 46  EVCGFAPYERRAMELLKVSKDKRALKFIKKRVG-THIR 82



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +3

Query: 270 LGTHIRAKRKREDLNTVLAQMRKAXAQ 350
           +GTHIRAKRKRE+L+ VLA MRKA A+
Sbjct: 77  VGTHIRAKRKREELSNVLAAMRKAAAK 103


>AB061833-1|BAB79471.1|  105|Homo sapiens ribosomal protein L36
           protein.
          Length = 105

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +2

Query: 176 EVVGHAQYEKXAMEFLKXSKDRRALKFLKRXIGHTHPR 289
           EV G A YE+ AME LK SKD+RALKF+K+ +G TH R
Sbjct: 46  EVCGFAPYERRAMELLKVSKDKRALKFIKKRVG-THIR 82



 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 20/27 (74%), Positives = 24/27 (88%)
 Frame = +3

Query: 270 LGTHIRAKRKREDLNTVLAQMRKAXAQ 350
           +GTHIRAKRKRE+L+ VLA MRKA A+
Sbjct: 77  VGTHIRAKRKREELSNVLAAMRKAAAK 103


>AB046410-1|BAB21256.1|   32|Homo sapiens ribosomal protein L36
           protein.
          Length = 32

 Score = 32.3 bits (70), Expect = 0.67
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +2

Query: 221 LKXSKDRRALKFLKRXIGHTHPR 289
           LK SKD+RALKF+K+ +G TH R
Sbjct: 1   LKVSKDKRALKFIKKRVG-THIR 22



 Score = 30.3 bits (65), Expect = 2.7
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = +3

Query: 270 LGTHIRAKRKREDLN 314
           +GTHIRAKRKRE+L+
Sbjct: 17  VGTHIRAKRKREELS 31


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,141,271
Number of Sequences: 237096
Number of extensions: 667710
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)