Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2164
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0282 - 16749358-16749445,16749640-16749695,16749965-167501...    32   0.37 
01_05_0508 - 22804809-22805231,22805775-22806797                       28   6.0  

>12_02_0282 -
           16749358-16749445,16749640-16749695,16749965-16750137,
           16750768-16750924,16751279-16751422,16751959-16752134,
           16753024-16753045,16753845-16753937,16754259-16754431,
           16754550-16754760
          Length = 430

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 470 NTRLPFLHTLYLYCIITGGRTSCESARVGTTXPACFCCEAVMRFGLKGGA 321
           N R+  +  +YL C+I  GR   E+   GTT P     E V++     GA
Sbjct: 320 NNRMSIVDEMYLACLINKGR---EAYITGTTNPTALPAETVLKMATINGA 366


>01_05_0508 - 22804809-22805231,22805775-22806797
          Length = 481

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = -3

Query: 458 PFLHTLYLYCIITGGRTSCESARVGT-TXPACFCCEAVMRFGLKGGAARCNYT*DLRTYI 282
           P    L+ YC+   G +   +  +G+ T          M    +GGA    Y  D+   I
Sbjct: 125 PVFDRLWDYCLRYSGGSLAAARTLGSGTADIAINWSGGMHHACRGGARGFCYVNDIVLAI 184

Query: 281 SRLVAHLRCRCLWAPVTT*HQVGCE 207
             L+AH R R L+  +   H  G +
Sbjct: 185 RELLAHFR-RVLYVDIDVHHGDGVQ 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,120,066
Number of Sequences: 37544
Number of extensions: 271747
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)