Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2162
(435 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 144 4e-36
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 144 5e-36
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 29 0.31
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 1.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.6
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.6
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 2.2
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 3.8
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 25 6.7
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 6.7
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce... 25 6.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 6.7
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz... 24 8.8
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 144 bits (350), Expect = 4e-36
Identities = 69/98 (70%), Positives = 80/98 (81%)
Frame = +2
Query: 50 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 229
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 230 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 343
ERER+D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 77 ERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 144 bits (349), Expect = 5e-36
Identities = 71/109 (65%), Positives = 85/109 (77%)
Frame = +2
Query: 50 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 229
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 230 ERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 376
ERER+D YVPEVS LE D + VD DTKDMLK L ++ I +++ PA Q
Sbjct: 77 ERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 29.1 bits (62), Expect = 0.31
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -3
Query: 433 FFFFFYSYNLLITPATIATLGSWLC*LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWD 254
F F Y+ L + + G L+ NI+E +++ + +YF+ M + +FW
Sbjct: 342 FLFVMYAVVLAVFFGIMHQNGVIPAVLEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWK 401
Query: 253 IVVTPLTLLFL-KFDR-DSSHL 194
I P +L KF + ++SHL
Sbjct: 402 IYSAPTWMLARPKFSQINTSHL 423
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -1
Query: 138 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 28
RG+V + AIS+ ++ F+ S++++ + + FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 191 SQVRGISIKLQEEERERRDNYVPEV 265
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 176 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 268
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 26.2 bits (55), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 319 QHILGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 206
Q L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 172 QTALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 156 PAILFLRGLVGMIAISSHILLFVSK 82
P I LRGLV A H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.6 bits (51), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 202
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 236 ERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGL 352
+R D E + ++ + +DPD KD+ +++ N N +
Sbjct: 303 DRFDKVEEEYTPIKDERELIDPDQKDVFDLVNDNQFNDI 341
>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 6.7
Identities = 7/28 (25%), Positives = 17/28 (60%)
Frame = +2
Query: 215 KLQEEERERRDNYVPEVSALEHDIIEVD 298
+ + +E+ RRD + L+H+I+ ++
Sbjct: 102 RARRKEKNRRDEVAEAILGLQHEIVRIN 129
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 6.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 182 LRHSQVRGISIKLQEEERERRDNYVPEVSALEH 280
L++ + K Q+ ++R D + EVSA++H
Sbjct: 853 LKYKSLVSFMFKEQDANKKREDFHSGEVSAIQH 885
>SPBC342.04 |||adhesion regulating molecule protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 291
Score = 24.2 bits (50), Expect = 8.8
Identities = 15/91 (16%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +2
Query: 107 EEIAIIPTKPLRNKIAGFATHLMRRLRH-SQVRGISIKLQEEERERRDNYVPEVSALEHD 283
++I + ++ K+ T L++ S + +QE + +Y +++ D
Sbjct: 54 DDIIVFSSECTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKD 113
Query: 284 IIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 376
+DP D+ + D ++ ++ ++P Q
Sbjct: 114 QDLLDPARSDVATVSDMMEVDTVEQSEPIAQ 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,602,403
Number of Sequences: 5004
Number of extensions: 30313
Number of successful extensions: 100
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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