Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2158
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   103   1e-23
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   103   1e-23
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    27   1.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    25   4.6  
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   6.1  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  103 bits (246), Expect = 1e-23
 Identities = 50/96 (52%), Positives = 66/96 (68%)
 Frame = +1

Query: 106 APIGLGLSPDCCSTNFQEPILLLGKEKFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAF 285
           AP+ L + P+       EPIL+ G +KF+ VDIRV V GGGHV Q+YAIRQAISKA++A+
Sbjct: 31  APLSL-VQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAY 89

Query: 286 YQKYVDEASKKEIKDILVQYDRSFAGG*PASLXAQK 393
           YQK+VDE SK E+K  L+ YDR+     P  +  +K
Sbjct: 90  YQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKK 125



 Score = 32.3 bits (70), Expect = 0.030
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +2

Query: 356 LLVADPRXCXPKKFGGPG 409
           LLVADPR   PKKFGG G
Sbjct: 113 LLVADPRRMEPKKFGGHG 130


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  103 bits (246), Expect = 1e-23
 Identities = 50/96 (52%), Positives = 66/96 (68%)
 Frame = +1

Query: 106 APIGLGLSPDCCSTNFQEPILLLGKEKFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAF 285
           AP+ L + P+       EPIL+ G +KF+ VDIRV V GGGHV Q+YAIRQAISKA++A+
Sbjct: 31  APLSL-VQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAY 89

Query: 286 YQKYVDEASKKEIKDILVQYDRSFAGG*PASLXAQK 393
           YQK+VDE SK E+K  L+ YDR+     P  +  +K
Sbjct: 90  YQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKK 125



 Score = 32.3 bits (70), Expect = 0.030
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +2

Query: 356 LLVADPRXCXPKKFGGPG 409
           LLVADPR   PKKFGG G
Sbjct: 113 LLVADPRRMEPKKFGGHG 130


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 199 DIRVTVKGGGHVXQVYAIRQAISKALI 279
           ++  TV GGG   Q  A+  AISK+LI
Sbjct: 64  NVWATVHGGGPTGQSGAVHAAISKSLI 90


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +1

Query: 130 PDCCSTNFQEPILLLGKEKFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAFYQKY 297
           P C  ++  +PILL     ++++     +    HV  +   +  I++ L+A  ++Y
Sbjct: 150 PGCMPSSIAKPILLKSSLHYAVLAQIWNLADSAHVGYLEMYQYVIARHLVAICKQY 205


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 249 YQTSYFKGSDRLLPEICRRSLKEGNQRHPS 338
           Y   YF G D   PE C        QRH S
Sbjct: 42  YHEPYFDGLDSAFPETCEIQQVHLLQRHGS 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,501,946
Number of Sequences: 5004
Number of extensions: 26494
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)