Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2158
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0152 - 1168928-1169377                                          101   2e-22
11_01_0155 - 1287003-1287452                                          101   2e-22
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539...    31   0.27 
02_05_1282 + 35442730-35442841,35443040-35443105,35443195-354432...    29   1.9  
11_01_0523 - 4109070-4109984,4110532-4110936                           28   2.5  
11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404...    27   5.8  

>12_01_0152 - 1168928-1169377
          Length = 149

 Score =  101 bits (243), Expect = 2e-22
 Identities = 47/82 (57%), Positives = 62/82 (75%)
 Frame = +1

Query: 109 PIGLGLSPDCCSTNFQEPILLLGKEKFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAFY 288
           PI L + P+       EPILL G+ +F  +D+R+ V+GGG   Q+YAIRQAI+KAL+A+Y
Sbjct: 41  PIEL-IRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYY 99

Query: 289 QKYVDEASKKEIKDILVQYDRS 354
           QKYVDEASKKE+KDI  +YDR+
Sbjct: 100 QKYVDEASKKEVKDIFARYDRT 121



 Score = 36.3 bits (80), Expect = 0.010
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +2

Query: 356 LLVADPRXCXPKKFGGPG 409
           LLVADPR C PKKFGG G
Sbjct: 122 LLVADPRRCEPKKFGGRG 139


>11_01_0155 - 1287003-1287452
          Length = 149

 Score =  101 bits (243), Expect = 2e-22
 Identities = 47/82 (57%), Positives = 62/82 (75%)
 Frame = +1

Query: 109 PIGLGLSPDCCSTNFQEPILLLGKEKFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAFY 288
           PI L + P+       EPILL G+ +F  +D+R+ V+GGG   Q+YAIRQAI+KAL+A+Y
Sbjct: 41  PIEL-IRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYY 99

Query: 289 QKYVDEASKKEIKDILVQYDRS 354
           QKYVDEASKKE+KDI  +YDR+
Sbjct: 100 QKYVDEASKKEVKDIFARYDRT 121



 Score = 36.3 bits (80), Expect = 0.010
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +2

Query: 356 LLVADPRXCXPKKFGGPG 409
           LLVADPR C PKKFGG G
Sbjct: 122 LLVADPRRCEPKKFGGRG 139


>07_03_1553 -
           27653473-27653490,27653634-27653673,27653852-27653939,
           27654150-27654230,27654644-27655084,27655692-27656325
          Length = 433

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +1

Query: 199 DIRVTVKGGGHVXQVYAIRQAISKAL 276
           D+  TVKGGG   QV AIR  IS+AL
Sbjct: 347 DVTCTVKGGGVSGQVGAIRLGISRAL 372


>02_05_1282 +
           35442730-35442841,35443040-35443105,35443195-35443282,
           35443393-35443474,35443589-35443740,35443866-35443990,
           35444309-35444367
          Length = 227

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 61  LRYWQAWSWMAACXRAPIGLGLSPDCCSTNFQEPILLL 174
           L++W  +S +  C   P  + LS  CC   F E ++++
Sbjct: 168 LQFWACFSSLIFCVEVPDFMALSCCCCVFLFAEDVIIM 205


>11_01_0523 - 4109070-4109984,4110532-4110936
          Length = 439

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 220 GGGHVXQVYAIRQAISKALIAFY 288
           GGG    V  +++A++KAL+AFY
Sbjct: 48  GGGGFFDVGRLKEALAKALVAFY 70


>11_04_0467 +
           18039458-18039638,18040136-18040227,18040336-18040452,
           18041228-18041313,18041385-18041643,18041761-18041957,
           18042181-18042213,18043371-18043862,18044236-18044299,
           18045478-18045618,18045726-18045803,18047077-18047166,
           18047260-18047352,18047430-18047489,18047567-18047635,
           18047737-18047823,18048337-18048379,18048517-18048587,
           18049050-18049143,18050335-18050447,18050909-18050998,
           18051075-18051155,18052211-18052291,18052369-18052464,
           18052543-18052599,18052693-18052737,18052807-18052872,
           18052961-18052999
          Length = 1004

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 175 GKEKFSMVDIRVTVKGGGHVXQVYAIRQAISKALIA 282
           GK+   +   R++V GGG+  Q+ A    IS+A ++
Sbjct: 118 GKQSNELGHARISVTGGGYFHQLLAEHTIISEAFLS 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,619,557
Number of Sequences: 37544
Number of extensions: 192243
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)