Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2158
(410 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical pr... 105 1e-23
AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical ... 29 0.99
AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical... 27 4.0
Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical pr... 27 5.3
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 27 7.0
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 27 7.0
AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4 ... 27 7.0
AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin pro... 27 7.0
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 26 9.2
>Z78413-6|CAB01658.1| 144|Caenorhabditis elegans Hypothetical
protein T01C3.6 protein.
Length = 144
Score = 105 bits (252), Expect = 1e-23
Identities = 47/90 (52%), Positives = 63/90 (70%)
Frame = +1
Query: 124 LSPDCCSTNFQEPILLLGKEKFSMVDIRVTVKGGGHVXQVYAIRQAISKALIAFYQKYVD 303
L P QEP+LL+GKE+F VDIR+ V GGGHV Q+YA+RQA++KAL+A+Y KYVD
Sbjct: 40 LEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVD 99
Query: 304 EASKKEIKDILVQYDRSFAGG*PASLXAQK 393
E SK+E+K+I YD+S P ++K
Sbjct: 100 EQSKRELKNIFAAYDKSLLVADPRRRESKK 129
Score = 31.9 bits (69), Expect = 0.19
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Frame = +2
Query: 17 QXVQXFGX*KTRXRSCGIGKRGHGWLRVXGRPLDLG*AQTAAVQTFRNLSFCSARKNSLW 196
Q VQ FG KT K+G G ++V GRPL+ Q ++ L + +
Sbjct: 6 QSVQTFGRKKTATAVAHC-KKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKER---F 61
Query: 197 LTSE*QSRVVVMXHK---FTLSDKLFQRL*SPSTRNM*TKPQRRKSKTS*XNTIGVLLVA 367
+ + RV H + + L + L + + + + +R+ K LLVA
Sbjct: 62 QDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYV-DEQSKRELKNIFAAYDKSLLVA 120
Query: 368 DPRXCXPKKFGGPG 409
DPR KKFGGPG
Sbjct: 121 DPRRRESKKFGGPG 134
>AC024090-2|AAK67219.1| 658|Caenorhabditis elegans Hypothetical
protein C52E2.4 protein.
Length = 658
Score = 29.5 bits (63), Expect = 0.99
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -2
Query: 403 TTELFGLAXTRVSHQQNSYRIXLGCL*FPSLRLRLHISGRRRS 275
TTELF + + R L C PS LRLHISG R+
Sbjct: 120 TTELFACTLHLQADHVSQLRFALKCF-NPSKLLRLHISGSNRN 161
>AL023835-15|CAA19492.2| 520|Caenorhabditis elegans Hypothetical
protein Y37A1B.9 protein.
Length = 520
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +3
Query: 174 RQGKILYG*HQSDSQ---GWWSCXTSLRYQTSYFKGSDRLLPEIC 299
R+ +I+ H + GW S L Y+T+Y + L P+ C
Sbjct: 259 RENEIIINIHDNPEMTRLGWTSLEYKLGYRTTYIMNLENLHPDFC 303
>Z93372-4|CAB07546.1| 301|Caenorhabditis elegans Hypothetical
protein BE10.4 protein.
Length = 301
Score = 27.1 bits (57), Expect = 5.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 295 YVDEASKKEIKDILVQYDRS 354
+ DE +KE+ D+ QYDRS
Sbjct: 151 FCDEVQQKEVGDLFHQYDRS 170
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 228 TTTLDCHSDVNHREFFLAEQKD-RFLKV 148
TT LDC + H EF+ AE D RF +
Sbjct: 146 TTFLDCLMEQTHPEFYRAEDADARFTDI 173
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 26.6 bits (56), Expect = 7.0
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 228 TTTLDCHSDVNHREFFLAEQKD-RFLKV 148
TT LDC + H EF+ AE D RF +
Sbjct: 21 TTFLDCLMEQTHPEFYRAEDADARFTDI 48
>AF410936-1|AAL05561.1| 348|Caenorhabditis elegans ephrin EFN-4
protein.
Length = 348
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 234 YMTTTLDCHSDVNHREFFLAEQKDRFLKVCTAAVWAQPKSNGRPXTR 94
YMTT+ + NHR + L E ++ L + +A +QP R TR
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSA--SQPHPTRRAPTR 192
>AF038619-2|AAB92075.2| 348|Caenorhabditis elegans Eph(f)rin
protein 4 protein.
Length = 348
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 234 YMTTTLDCHSDVNHREFFLAEQKDRFLKVCTAAVWAQPKSNGRPXTR 94
YMTT+ + NHR + L E ++ L + +A +QP R TR
Sbjct: 148 YMTTSTGKANGTNHRMYGLCESQNMRLSMKVSA--SQPHPTRRAPTR 192
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
F28B4.3 protein.
Length = 2229
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 202 IRVTVKGGGHVXQVYAIRQAISKALIAFYQKYVDEA 309
I++TV G G QVY +++AL FY Y ++
Sbjct: 1138 IQLTVFGYGTTIQVYNGNGVLAEALELFYDDYTGQS 1173
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,458,446
Number of Sequences: 27780
Number of extensions: 149298
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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