Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2156
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc...    27   2.5  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    26   4.4  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   7.6  

>SPBC3B9.06c |apg3||autophagy associated protein Apg3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 505 NVTKHVQPRQRTSIFKVEHLVRVEEFPKGGDEL 407
           N  +H+ P  +TS F+   ++  EEF   GD L
Sbjct: 11  NWREHITPASKTSDFENTGMISPEEFVLAGDYL 43


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 464 NGGPLPGLYVFRHIPH 511
           NG PLPG  + +H+ H
Sbjct: 708 NGNPLPGTIIEKHVTH 723


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 405 WSSSPPLGNSSTLTRCSTLKMEVLCLGCTCFV 500
           W  +    + ++LTR   +   ++CLGC  F+
Sbjct: 213 WLFNQIFSHRNSLTRIKIIIWWIICLGCFIFI 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,128,289
Number of Sequences: 5004
Number of extensions: 42476
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)