Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2156
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 61 7e-10
12_01_0748 - 6728221-6728305,6728788-6728842,6729202-6729289,672... 59 2e-09
01_06_0938 - 33179237-33179362,33179485-33179668,33180114-331804... 47 9e-06
04_04_1275 + 32321161-32321285,32321849-32322071,32322187-323223... 46 2e-05
08_01_0530 - 4593665-4594006,4594169-4594285,4594417-4594504,459... 41 6e-04
02_05_1012 - 33495325-33495486,33495781-33495897,33496193-334962... 38 0.007
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 32 0.36
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 31 0.83
12_02_0357 + 17941898-17943691 29 1.9
03_06_0271 - 32773895-32774608 29 1.9
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260... 29 2.5
04_04_0646 + 26926827-26926993,26927246-26927336 28 5.9
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622 27 7.7
06_03_0500 + 21470681-21470952,21471049-21471089,21472322-214724... 27 7.7
05_02_0133 + 6949546-6949740,6950132-6950350,6951092-6951307 27 7.7
04_04_0008 + 22125707-22125828,22127122-22127197,22127297-221273... 27 7.7
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 27 7.7
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 27 7.7
>12_02_0870 -
23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 60.9 bits (141), Expect = 7e-10
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Frame = +2
Query: 269 ALREAKYEDKHLLVMLLPSIEPTMVPEGVKPLLVFVNVKSGGCQGLELISSFRKLLNPYQ 448
++ ++ED H V E VP +PLLVF+N +SG G L + LLNP Q
Sbjct: 321 SIPNGQHEDSH--VHNNQKYEIVDVPSDSRPLLVFINKRSGAQCGDSLRQRLQILLNPIQ 378
Query: 449 VFDL-ENGGPLPGLYVFRHIPHYXILVGG 532
VF+L + GP GL +FR +PH+ +LV G
Sbjct: 379 VFELGKQQGPEVGLTLFRKVPHFRVLVCG 407
>12_01_0748 -
6728221-6728305,6728788-6728842,6729202-6729289,
6729681-6729818,6729978-6730142,6730235-6730354,
6730555-6730631,6730738-6731113,6731523-6732617
Length = 732
Score = 59.3 bits (137), Expect = 2e-09
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Frame = +2
Query: 341 VPEGVKPLLVFVNVKSGGCQGLELISSFRKLLNPYQVFDLE-NGGPLPGLYVFRHIPHYX 517
+P+ +PLLVF+N KSGG G L LLNP Q+F+L + GP GL F ++ H+
Sbjct: 330 LPQDSRPLLVFINGKSGGRNGPSLRRRLNMLLNPIQIFELSASQGPEVGLQFFHNVKHFR 389
Query: 518 ILVGG 532
ILV G
Sbjct: 390 ILVCG 394
>01_06_0938 -
33179237-33179362,33179485-33179668,33180114-33180409,
33180702-33180821,33180931-33181018,33181352-33181426,
33181565-33181632,33181770-33181852,33182010-33182058,
33183006-33183126,33183225-33183310,33183782-33183910,
33184033-33184155,33184277-33184486,33185217-33185240
Length = 593
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/39 (56%), Positives = 28/39 (71%)
Frame = +2
Query: 359 PLLVFVNVKSGGCQGLELISSFRKLLNPYQVFDLENGGP 475
P++VF+N KSGG G +LI ++RKLLN QVFDL P
Sbjct: 49 PVIVFINTKSGGQLGHDLIVTYRKLLNNSQVFDLLEEAP 87
>04_04_1275 +
32321161-32321285,32321849-32322071,32322187-32322309,
32322391-32322519,32322939-32323024,32323233-32323356,
32323531-32323579,32323808-32323890,32323975-32324042,
32324187-32324264,32324460-32324547,32324640-32324756,
32324844-32325176
Length = 541
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 311 MLLPSIEPTMVPEG-VKPLLVFVNVKSGGCQGLELISSFRKLLNPYQVFDLENGGP 475
+L P E +V + P++VF+N +SGG G LI ++R+LLN QVFDL P
Sbjct: 70 ILNPDSEQVLVDQAPCCPVVVFINSRSGGQLGSSLIKTYRELLNKAQVFDLSEEAP 125
>08_01_0530 -
4593665-4594006,4594169-4594285,4594417-4594504,
4594929-4595006,4595914-4595927,4595993-4596075,
4596359-4596407,4596535-4596658,4596936-4597021,
4597232-4597360,4597465-4597587,4597699-4597908
Length = 480
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +2
Query: 359 PLLVFVNVKSGGCQGLELISSFRKLLNPYQVFDLENGGP 475
P+LVF+N SGG G LI ++R+LL QVFD+ P
Sbjct: 41 PVLVFINSGSGGQLGSSLIKTYRELLGEAQVFDVSEEAP 79
>02_05_1012 -
33495325-33495486,33495781-33495897,33496193-33496280,
33497878-33497948,33498382-33498464,33498939-33499008,
33499743-33499839,33500156-33500210,33500285-33500308,
33500417-33500504,33500764-33500886,33502026-33502379
Length = 443
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/40 (47%), Positives = 25/40 (62%)
Frame = +2
Query: 341 VPEGVKPLLVFVNVKSGGCQGLELISSFRKLLNPYQVFDL 460
V V P++VFVN +SGG G EL +L++ QVFDL
Sbjct: 83 VEAAVTPVVVFVNSRSGGRHGPELKVRLHELISEEQVFDL 122
>01_07_0112 - 41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 31.9 bits (69), Expect = 0.36
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 335 TMVPEGVKPLLVFVNVKSGGCQGLELISSFRKLLNPYQVFDLEN 466
T +PE +K L + ++ GC+GLE++ LL + F + N
Sbjct: 1574 TFLPESMKNLTALIELRLDGCKGLEILPEGLGLLISLEKFIINN 1617
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 305 LVMLLPSIEPTMVPEGVKPLLVFVNVKSGGCQGLELISSFRKLLNPYQVFDLEN 466
++M P + T +PE +K L + + GC+GLE + LL + F + N
Sbjct: 1422 IIMDCPKL--TFLPESMKNLTALIELHLDGCKGLETLPEGLGLLISLKKFVISN 1473
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 305 LVMLLPSIEPTMVPEGVKPLLVFVNVKSGGCQGLELISSFRKLLNPYQVF 454
++M P + T +PE +K L + + GC+GLE++ + +L + F
Sbjct: 1662 IIMDCPKL--TFLPESMKNLTALIRLLLDGCKGLEILPEWLGMLVSLEEF 1709
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 335 TMVPEGVKPLLVFVNVKSGGCQGLELI 415
T +PE +K L + + GC+GLE++
Sbjct: 1622 TFLPESMKNLTALIELWLDGCKGLEIL 1648
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 30.7 bits (66), Expect = 0.83
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 257 RALYALREAKY-EDKHLLVMLLPSIEPTMVPEGVKPLLVFVNVKSG 391
RAL+ L + Y +D HLL+ L+ + + E V+P L F+ +G
Sbjct: 1166 RALHCLSQELYSQDSHLLLELVQNADDNTYVEDVEPTLAFILQDNG 1211
>12_02_0357 + 17941898-17943691
Length = 597
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -1
Query: 365 AGVSRPLAPSWAQCWVGA*L-INAYLHIWPL*ERTTRAPP 249
+G+ + +AP+WA +GA + + YL ++ +R T APP
Sbjct: 82 SGLVQQVAPTWAVLLIGAAMNLAGYLMVYLALDRRTAAPP 121
>03_06_0271 - 32773895-32774608
Length = 237
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 369 SSST*SRADVRAWSSSPPLGNSSTLTRCSTLKMEVLCLG--CTCFVTF 506
+SS + AD SSSP G RC+T + +V G C C TF
Sbjct: 150 ASSAAAAADASYSSSSPATGEQPEANRCATCRRKVGLTGFKCRCGGTF 197
>05_07_0148 +
28024820-28025293,28025655-28025702,28026034-28026080,
28026334-28026496,28026595-28026656,28026820-28027003,
28027093-28027182,28027553-28027686,28027747-28027936,
28028103-28029033,28029860-28030065
Length = 842
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -2
Query: 424 KGGDELQALTSARLHVDEDQQG 359
KGG ELQA+ SA L+V ED QG
Sbjct: 356 KGGKELQAIESAELNV-EDAQG 376
>04_04_0646 + 26926827-26926993,26927246-26927336
Length = 85
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 199 DLLRVRFDGDNV*GREQGGARVVRSQRG 282
+L VRFDGD V GRE G R Q G
Sbjct: 33 ELEEVRFDGDVVEGREVDGVVTRRRQLG 60
>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
Length = 313
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 322 QH*AHDGARGRETPAGLRQREVGRMSGPGAHLLL*ETPQPLPGVRP*KWRSFAWAVR 492
Q A DG+RGR G + R+ G GA + +P RP +WR AW R
Sbjct: 205 QRGAADGSRGRLGVRGTSGEDGDRLGGRGAT----DGGRPDWRERPVRWRRPAWRER 257
>06_03_0500 +
21470681-21470952,21471049-21471089,21472322-21472485,
21472577-21472679,21472806-21472975,21473766-21474239
Length = 407
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 34 MKLRAVLP*SRAGTRTGP-TLALFVASLPPGLSERNYEKH 150
++++ +P ++ GP T +FV +PP L+E ++H
Sbjct: 160 VEVKRTVPREEMSSKDGPKTRKIFVGGIPPSLTEDKLKEH 199
>05_02_0133 + 6949546-6949740,6950132-6950350,6951092-6951307
Length = 209
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 137 LRSXRPGGNEATKSARVGPVRVPARLQGKTARSFXXPQRXR 15
L S PG ++ + SA V ++ P L RSF PQR +
Sbjct: 41 LHSHAPGEHQCS-SALVKHIKAPVHLVWSLVRSFDQPQRYK 80
>04_04_0008 +
22125707-22125828,22127122-22127197,22127297-22127367,
22127502-22127995,22128079-22128239,22128329-22128532,
22129292-22129526,22129996-22130591
Length = 652
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 95 ARVGPVRVPARLQGKTARSFXXPQRXRXPTG 3
A++GP PAR+QG+++ P+R P+G
Sbjct: 76 AKLGPAATPARIQGRSS-----PKRIEGPSG 101
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 185 TSIGPIYYEYGSMVITYEDASKAVRALYALREAKYEDKHLLVMLLPS 325
TS + YE + + Y+D+ ++ R+ A A +KH L+ L S
Sbjct: 1657 TSFSNVNYELQELRVKYKDSEESSRSYLADNTALLAEKHKLLSQLES 1703
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 359 PLLVFVNVKSGGCQGLELISSFRKLLNPYQVFDLENG 469
P + F N+K GC G ++ + K L P D +G
Sbjct: 463 PNVCFKNIKEAGCMGASMVLAMTKSLYPKIDVDTVDG 499
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,053,522
Number of Sequences: 37544
Number of extensions: 356873
Number of successful extensions: 901
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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