Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2156
         (560 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    25   1.7  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    25   1.7  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    25   2.2  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    25   2.2  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    23   6.8  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   9.0  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    23   9.0  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   9.0  

>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 250 LARVLIRYHHRTVLVVDRPDRCKLIF 173
           L  V++ YHHRT  + + P   K +F
Sbjct: 311 LTVVVLNYHHRTADIHEMPPWIKSVF 336


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 250 LARVLIRYHHRTVLVVDRPDRCKLIF 173
           L  V++ YHHRT  + + P   K +F
Sbjct: 311 LTVVVLNYHHRTADIHEMPPWIKSVF 336


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 116 GNEATKSARVGPVRVPARLQ 57
           GN A+   R GP+R PA ++
Sbjct: 150 GNAASGMVRKGPIRAPANIR 169


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 116 GNEATKSARVGPVRVPARLQ 57
           GN A+   R GP+R PA ++
Sbjct: 150 GNAASGMVRKGPIRAPANIR 169


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 227 ITYEDASKAVRALYALREA 283
           IT++D++  VRA +A R A
Sbjct: 329 ITFDDSASVVRATHASRSA 347


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 393 DVRAWSSSPPLGNSSTLTRCS 455
           D+R W+S+  +G+ +T   CS
Sbjct: 138 DLRKWTSTEAIGDVTTGIACS 158


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 393 DVRAWSSSPPLGNSSTLTRCS 455
           D+R W+S+  +G+ +T   CS
Sbjct: 139 DLRKWTSTEAIGDVTTGIACS 159


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 351 PSGTIVGSMLGRSITNKCLSSYLASLR 271
           P   I  S+LGR ++N C + +  + R
Sbjct: 737 PDIAISASILGRKVSNPCQADWTEAKR 763


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,831
Number of Sequences: 2352
Number of extensions: 12408
Number of successful extensions: 40
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)