Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2154
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    22   4.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          22   4.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.3  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.3  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   9.3  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   9.3  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.3  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 278 TDYNNYAIAYNCKY 319
           ++YNNY   ++C+Y
Sbjct: 222 SNYNNYQEGFSCQY 235


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = +2

Query: 278 TDYNNYAIAYNCKY 319
           ++YNNY   ++C+Y
Sbjct: 242 SNYNNYQEGFSCQY 255


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 544 FKXLFSLNVSGFGYHAGAGKFAG 476
           ++   +LN+SGFG    +G  AG
Sbjct: 117 YQTFSNLNISGFGGVQESGDIAG 139


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 230 FKFGEISRDGSVQVLATDYNNYAIAYNCK 316
           F FG  + +G        YNN +    CK
Sbjct: 15  FHFGAFTCEGCKSFFGRTYNNISSISECK 43


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 182 PSSPTTPIKPQS*QSLFK 235
           PSS ++  +P+S +SLFK
Sbjct: 285 PSSTSSSPEPRSPESLFK 302


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 326 CHRICSCK 303
           CHR+ SCK
Sbjct: 140 CHRVLSCK 147


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 114 FQFVFXLKSICRXSQIRWEXS 52
           +QF+  L    R +Q RW+ S
Sbjct: 167 YQFIMDLFPFYRQNQQRWQNS 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,767
Number of Sequences: 336
Number of extensions: 2461
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)