Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2154
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    28   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.9  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    26   4.4  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    25   7.7  

>SPBC31F10.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 135

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 24/84 (28%), Positives = 40/84 (47%)
 Frame = +3

Query: 210 RKANSHFLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSLIKCSSGSSLKTRSLKAT 389
           RKA +H+ S  + H     K  R      P L +   +T  SLI  +S  S++ +S +  
Sbjct: 62  RKAQNHYYSPSRTHT-SSIKKKR------PKLCSNINLTPWSLIDSTSNKSIREQSRE-- 112

Query: 390 LKLLSIISSRNTPKR*TLRNLCIP 461
              + IIS +   ++  +R+LC P
Sbjct: 113 ---MGIISIQKWAEQARMRSLCFP 133


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 374  KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 475
            K+EGDAKT  DN +++  K  D  K    D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 20/79 (25%), Positives = 37/79 (46%)
 Frame = +3

Query: 207 SRKANSHFLSLEKYHAMDQFKSWRLTIITTPSLTTANTMTRKSLIKCSSGSSLKTRSLKA 386
           S  A S+  +L+      Q  S      + P+LTT+NT  + S    SS   +++ S+  
Sbjct: 266 SASAYSYITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQISSTISSSSFIVESPSVAL 325

Query: 387 TLKLLSIISSRNTPKR*TL 443
           +    + I++ +TP   T+
Sbjct: 326 STSSTTTITNASTPAANTI 344


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = -1

Query: 344 LDETFSCHRICSCKRWRSYYSQSP----RLELIHRVIFLQT 234
           L E    H+ C+ K W   YS+ P    R E+  R I+  T
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIPSRLIRCEVEDRSIYTTT 479


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 270 SWRLTIITTPSLTTANTMTRKSL 338
           S+RL + T+P+L   N   RKSL
Sbjct: 175 SYRLQVYTSPNLLRVNAPCRKSL 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,425,832
Number of Sequences: 5004
Number of extensions: 42940
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)