Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2154
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1115 - 34623892-34624129,34624589-34624737,34625017-346251...    31   0.64 
03_01_0608 + 4471738-4472115                                           29   2.6  
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531...    29   3.4  
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366...    29   4.5  
01_01_0384 - 2970369-2970726,2970812-2970882,2971428-2971509,297...    28   6.0  
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264...    28   7.9  

>01_06_1115 -
           34623892-34624129,34624589-34624737,34625017-34625125,
           34625339-34625408,34625600-34626111,34626420-34626524,
           34626617-34626696
          Length = 420

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = +2

Query: 353 WILSKNKKLEGDAKTAVDNFIKEHSKEIDS-----SKLVHTDFSEEACKFTSSSVIXEPG 517
           W++  N+ L   A+T  + F  E S  +DS     S  + T FS+ A K +SSS I +  
Sbjct: 86  WLVLINQALNRPAETNANVFQNEPSPSVDSSVSRASSSLDTSFSDLA-KTSSSSTIFQKS 144

Query: 518 NIKT 529
           N+K+
Sbjct: 145 NLKS 148


>03_01_0608 + 4471738-4472115
          Length = 125

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 389 RRLQASCF*RGSRRTLDETFSCHRICSCKR 300
           +RL+A+   RG  ++ DE F C R+C+ KR
Sbjct: 32  QRLKAA---RGREKSSDEVFVCERVCTSKR 58


>03_02_0058 -
           5316112-5316418,5316497-5316705,5316773-5316859,
           5316945-5317055,5317536-5317643,5319082-5319149,
           5319269-5319320
          Length = 313

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/62 (32%), Positives = 30/62 (48%)
 Frame = +3

Query: 246 YHAMDQFKSWRLTIITTPSLTTANTMTRKSLIKCSSGSSLKTRSLKATLKLLSIISSRNT 425
           YH  D+ KS  +  +T    T  NT+T   L K    +++K R L  T KL +++     
Sbjct: 225 YHLDDKQKSSVVAELTRRLSTNENTLTVGGLYKVDPETAVKAR-LNNTGKLAALLQHEVK 283

Query: 426 PK 431
           PK
Sbjct: 284 PK 285


>05_01_0463 -
           3666626-3666933,3667060-3667258,3667388-3667629,
           3667823-3669035
          Length = 653

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 308 NCKYDDKKKSHQVFVWILSKNKKLEGDAKTAVDN 409
           +CK D     H  +  +   N+ LEGD ++ +DN
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDN 589


>01_01_0384 -
           2970369-2970726,2970812-2970882,2971428-2971509,
           2971757-2971818,2972308-2972401,2972502-2972569,
           2972681-2972747,2972830-2972960,2973093-2973200,
           2973577-2973642,2973706-2973774,2973990-2974115,
           2974167-2974284,2974741-2974847,2975889-2976009,
           2976162-2976235,2976955-2977051,2977564-2977679,
           2978218-2978313,2978426-2978635,2979101-2979253
          Length = 797

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/62 (20%), Positives = 27/62 (43%)
 Frame = +2

Query: 365 KNKKLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEEACKFTSSSVIXEPGNIKTEKXLE 544
           K K+   + +   DNF+K     + + K + +   E  C +  +  + +  ++ TE   E
Sbjct: 526 KEKRTNDELERCTDNFLKLTKYHLSTFKEILSPSIERICTYVDNLAVLQSRDVSTEHDNE 585

Query: 545 AL 550
            L
Sbjct: 586 EL 587


>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
            25826596-25827333,25827712-25827919,25828455-25830409,
            25830868-25830960,25831044-25831100,25831189-25831272,
            25831345-25831437,25831622-25832053,25833593-25833933,
            25834663-25835215
          Length = 2061

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 224  SLFKFGEISRDGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSKNKKLEGDAKTAV 403
            +L KFGE+    SV    +  ++   +   +   K+K   +    +  NK L  D+   +
Sbjct: 1643 ALCKFGELGESRSVMTECSSVDSDISSAFLQSPRKRKQRSLQACAVPTNKLLFSDSLNQI 1702

Query: 404  DNFIKEHSKEIDSSKL 451
                 EH++    SKL
Sbjct: 1703 PGDYAEHAEVFSPSKL 1718


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,046,545
Number of Sequences: 37544
Number of extensions: 258113
Number of successful extensions: 763
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)