Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2151
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    27   1.9  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po...    25   7.8  

>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +2

Query: 134  QQE*AQHR*RRCWLRELLPWAVSGQLSEQLPARSRGISERSGIPGSVRPGG-TARGSSRL 310
            Q+E A+   R+  +++     +S +L+E+  AR   I   S  PG+ R GG +A G SR 
Sbjct: 835  QREMAEKLERQRRIQQERDEEISRKLAEKAAARRANIGASSPSPGAWRRGGASAGGVSRD 894

Query: 311  PP 316
             P
Sbjct: 895  SP 896


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 300 EPRAVPPGRTDPGIPDRSDIPLDLAGSCSDNCP 202
           +P  +PP R   GIP  S+ P+D   S S   P
Sbjct: 118 KPHPLPPKRVSLGIPSISNPPVDTVISDSPTSP 150


>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 120 LNQPHNQQQMYKQVQEQIFSSP 55
           LNQP  QQQ  +Q Q Q  ++P
Sbjct: 149 LNQPPQQQQQQQQQQHQQHATP 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,625
Number of Sequences: 5004
Number of extensions: 43323
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)