Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2151
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0801 + 20670795-20671730                                         29   4.6  
06_01_0664 + 4850445-4850879,4853155-4854186                           29   4.6  
04_01_0070 - 706640-706747,707221-707307,707397-707502,707585-70...    28   6.0  
01_06_0775 - 31909855-31909897,31909984-31910055,31910400-319104...    28   6.0  
10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647     28   8.0  

>10_08_0801 + 20670795-20671730
          Length = 311

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 519 PRQACPRNXXEDPXSSSWRSTDILHKSWRTGTCSPFCDIHSREKK 385
           PR   P +    P S  W  TD+L +  RT +   +C+    E+K
Sbjct: 226 PRTPTPYSPARTPASPMWLVTDLLRRR-RTVSFEDYCNEEEEERK 269


>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
 Frame = +3

Query: 309 CPLCDSSVYSYCSRKQAHDSCCCDNPSF--PGYGCRKTDCKFLYANSC 446
           C  C   + +Y         C CD   F   GY C    CK++    C
Sbjct: 9   CGKCSRMMENYDHTNSNSRDCTCDKCHFLLAGYSCPYASCKYMIHKVC 56


>04_01_0070 -
           706640-706747,707221-707307,707397-707502,707585-707693,
           707766-708145,708508-708601,709351-709475,709633-709674,
           710822-710892,710979-711060,711157-711277,712404-712713
          Length = 544

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 330 LTNHIGGNRDEPRAVPPGRTDPGIPDRSD 244
           L + I G   EP AVP   T P +P  +D
Sbjct: 343 LNDSIQGEAQEPTAVPVENTQPSVPQPTD 371


>01_06_0775 -
           31909855-31909897,31909984-31910055,31910400-31910488,
           31911298-31911522
          Length = 142

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 290 RSRRAVLTRVSRTARIYPWTLRVVARIIARIL 195
           R RR   T  +  AR + WTLR + R +AR L
Sbjct: 46  RQRRRTRTCATMAARPWTWTLRRMQRRVARCL 77


>10_06_0153 + 11285685-11285716,11288322-11288974,11289541-11289647
          Length = 263

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 318 CDSSVYSYCSRKQAHDSCCCDNPSFPGYGCRKTDCKFLYAN 440
           C+  V+S+CS +     CC    S+  Y    +  KFL+ +
Sbjct: 213 CEDQVHSWCSIETGEIGCCVRCMSYEIYLVHPSTDKFLFGD 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,636,525
Number of Sequences: 37544
Number of extensions: 305482
Number of successful extensions: 1050
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)