Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2151
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    33   0.14 
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    33   0.14 
AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z81503-2|CAB04112.1|  517|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical p...    29   4.1  
U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z81503-3|CAB04113.1|  518|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z48717-5|CAA88610.1|  519|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    27   9.5  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    27   9.5  

>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
           protein B0379.3b protein.
          Length = 1050

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = -3

Query: 408 DIHSREKKDYRSSRNHGLVYANSNYTLTNHIGGNRDEPRAVPPGRTDPGIPDRSDIPLDL 229
           D+ ++ K   + ++N+G   +  NY      GG R + R  P  R +  +PD +  P   
Sbjct: 362 DVRNKWKTGNQRNQNYG---SQGNY----RAGGQRSDDRRGPQQRRNVIVPDPNYQPSTF 414

Query: 228 AGSCSDNCPDTAQGSSSRSQH 166
           AG  S+N  D      + S H
Sbjct: 415 AGGISNNADDDGSLQPTTSSH 435


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
           protein B0379.3a protein.
          Length = 1054

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = -3

Query: 408 DIHSREKKDYRSSRNHGLVYANSNYTLTNHIGGNRDEPRAVPPGRTDPGIPDRSDIPLDL 229
           D+ ++ K   + ++N+G   +  NY      GG R + R  P  R +  +PD +  P   
Sbjct: 366 DVRNKWKTGNQRNQNYG---SQGNY----RAGGQRSDDRRGPQQRRNVIVPDPNYQPSTF 418

Query: 228 AGSCSDNCPDTAQGSSSRSQH 166
           AG  S+N  D      + S H
Sbjct: 419 AGGISNNADDDGSLQPTTSSH 439


>AF040655-8|AAB95047.1|  632|Caenorhabditis elegans Hypothetical
           protein T24E12.10 protein.
          Length = 632

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 270 DPGIPDRSDIPLDLAGSCSDNCPDTAQGSSSRSQH 166
           D  +P  S  PL+LA +C D     A+ SSS + H
Sbjct: 178 DDDVPGESVAPLELAQNCDDVVAPIAEPSSSSANH 212


>Z81503-2|CAB04112.1|  517|Caenorhabditis elegans Hypothetical
           protein F14F7.2 protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 643 SLLKEIFSLEYLNFXGPNANPIKTD 569
           +L+ E+F  +Y NF G N NPI+ D
Sbjct: 83  NLIHEVFVKQYDNFYGRNLNPIQGD 107


>U23172-18|ABC48253.1|  915|Caenorhabditis elegans Hypothetical
           protein F25B5.1a protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 648 YLACLKKFSLWNILTLXVPMRIQSKQMXQMVKLKCSI 538
           Y++C K   +WN L      +++S++M Q++KL  S+
Sbjct: 736 YVSCAKTLQIWNDLDRHQQKKLKSERM-QLLKLSSSV 771


>U23172-17|ABC48254.1|  923|Caenorhabditis elegans Hypothetical
           protein F25B5.1b protein.
          Length = 923

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 648 YLACLKKFSLWNILTLXVPMRIQSKQMXQMVKLKCSI 538
           Y++C K   +WN L      +++S++M Q++KL  S+
Sbjct: 744 YVSCAKTLQIWNDLDRHQQKKLKSERM-QLLKLSSSV 779


>Z81503-3|CAB04113.1|  518|Caenorhabditis elegans Hypothetical
           protein F14F7.3 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 640 LLKEIFSLEYLNFXGPNANPIKTDGXNGK 554
           L++E+F  +Y NF G   NPI+ D    K
Sbjct: 85  LVQEVFVKQYDNFFGRKLNPIQGDPNKDK 113


>Z81064-2|CAB02963.1|  259|Caenorhabditis elegans Hypothetical
           protein F16B12.2 protein.
          Length = 259

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 462 STDILHKSWRTGTCSPFCDIHSREK 388
           S  +++++WRT +CS FC   S  K
Sbjct: 13  SNFLIYRNWRTHSCSIFCKDRSDSK 37


>Z48717-5|CAA88610.1|  519|Caenorhabditis elegans Hypothetical
           protein T10B9.8 protein.
          Length = 519

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 640 LLKEIFSLEYLNFXGPNANPIKTDGXNGK 554
           L+ E+F  +Y NF G   NPI+ D    K
Sbjct: 86  LVHEVFVTQYDNFYGRKRNPIQGDSEKEK 114


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 351 KQAHDSCCCDNPSFPGYGCRKTDCKFLYANSCEEYQLISNCC 476
           ++ H S  CD P  P + CR  +    +A+ C++ ++    C
Sbjct: 577 EEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPC 618


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 351 KQAHDSCCCDNPSFPGYGCRKTDCKFLYANSCEEYQLISNCC 476
           ++ H S  CD P  P + CR  +    +A+ C++ ++    C
Sbjct: 577 EEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPC 618


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,323,383
Number of Sequences: 27780
Number of extensions: 265126
Number of successful extensions: 946
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)