Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2149
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 107 9e-24
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 99 2e-21
CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical ... 31 0.68
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 3.6
Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical p... 28 4.8
AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase... 28 4.8
Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical pr... 28 6.3
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 6.3
U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical pr... 27 8.4
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 8.4
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 8.4
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 107 bits (256), Expect = 9e-24
Identities = 47/55 (85%), Positives = 50/55 (90%)
Frame = +3
Query: 24 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 188
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVH 61
Score = 96.7 bits (230), Expect = 1e-20
Identities = 49/102 (48%), Positives = 69/102 (67%), Gaps = 2/102 (1%)
Frame = +1
Query: 181 KFTLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDL 357
K +V IDIF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DL
Sbjct: 59 KVHMVAIDIFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDL 117
Query: 358 KIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 480
K+PD +LG Q+R ++ + +L V+ + GEE ++ K +T
Sbjct: 118 KLPDTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVST 159
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 99.1 bits (236), Expect = 2e-21
Identities = 49/102 (48%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Frame = +1
Query: 181 KFTLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDL 357
K +V IDIF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DL
Sbjct: 93 KVHMVAIDIFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDL 151
Query: 358 KIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKANT 480
K+P+GDLG +R + + +L V+ +CGEE ++ K +T
Sbjct: 152 KMPEGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYKIST 193
Score = 96.3 bits (229), Expect = 2e-20
Identities = 41/55 (74%), Positives = 49/55 (89%)
Frame = +3
Query: 24 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 188
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVH 95
>CU457743-2|CAM36365.1| 695|Caenorhabditis elegans Hypothetical
protein K09E10.2 protein.
Length = 695
Score = 31.1 bits (67), Expect = 0.68
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +1
Query: 250 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 420
N +P +K++ Y L ++ GY+ + GDL+ KI D LR D ++ G+
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629
Query: 421 LCTVLKSCGEEC 456
++K CG++C
Sbjct: 630 HAALVKECGDKC 641
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +1
Query: 205 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 360
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 19 TSKTHTLRPETPGPQPPSPCNVRP 90
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>Z83123-10|CAB05609.2| 988|Caenorhabditis elegans Hypothetical
protein T04A11.6 protein.
Length = 988
Score = 28.3 bits (60), Expect = 4.8
Identities = 27/108 (25%), Positives = 49/108 (45%)
Frame = +1
Query: 124 VHARLLKCPHPKPESTATLKFTLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDIS 303
+H RL P+ A + T G D+ NGKK + H + KR++ L ++S
Sbjct: 731 IHERLYSVPNQAAAVFAYAELTEAGRDLANGKKTAKV--YLHIVTCER-KRKNAGLIELS 787
Query: 304 DDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 447
+ + ++++ L+E + GD+ T+ D L+ V +S G
Sbjct: 788 N---MNIVSEAQALKERHMVKHGDVFTRCLQDL---THLITAVAESSG 829
>AY095296-1|AAM26298.1| 988|Caenorhabditis elegans RecQ helicase
protein.
Length = 988
Score = 28.3 bits (60), Expect = 4.8
Identities = 27/108 (25%), Positives = 49/108 (45%)
Frame = +1
Query: 124 VHARLLKCPHPKPESTATLKFTLVGIDIFNGKKYEDICPSTHNMDVPHVKREDYQLTDIS 303
+H RL P+ A + T G D+ NGKK + H + KR++ L ++S
Sbjct: 731 IHERLYSVPNQAAAVFAYAELTEAGRDLANGKKTAKV--YLHIVTCER-KRKNAGLIELS 787
Query: 304 DDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 447
+ + ++++ L+E + GD+ T+ D L+ V +S G
Sbjct: 788 N---MNIVSEAQALKERHMVKHGDVFTRCLQDL---THLITAVAESSG 829
>Z70310-6|CAE17904.1| 293|Caenorhabditis elegans Hypothetical
protein R11A8.8 protein.
Length = 293
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 310 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 426
GYL GD ++++K+ +G Q+ +D D K C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 106 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 14
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>U88178-1|AAC24412.1| 296|Caenorhabditis elegans Hypothetical
protein W09C3.4 protein.
Length = 296
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 473 ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILR 354
ALT+MT PQ NSL SK + + ++P G+LR
Sbjct: 33 ALTSMTPGLPQTVRQTAINSLLSSKKL--AIQQAPGGVLR 70
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 332 TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 472
T +TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +2
Query: 332 TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 472
T +TC T+ + + ++SC CC C NP + P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,179,132
Number of Sequences: 27780
Number of extensions: 334019
Number of successful extensions: 1094
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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