Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2141
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.8  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   6.4  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 260 YDAHPQYSFAYDVQDSLTGDSXT--QHETRDGDVVQGSYSVVDPDGTKRTVDYTAD 421
           Y  + QY+   D++D  T D  T  +HE  D +V +   S+   +GT  TV+ T++
Sbjct: 206 YITNSQYNDTLDMEDQ-TSDLITTFEHENEDHEVHEVP-SIHGMEGTFETVNLTSE 259


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 203 RTPPIRQXXXXXXXXXXEEYDAHPQYSFAYDVQDSLTG 316
           R P I +           +Y A+P Y FA  + DSL G
Sbjct: 361 RDPVIYRCNLLPHHRTGTKYRAYPTYDFACPIVDSLEG 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,718,770
Number of Sequences: 5004
Number of extensions: 24597
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)