Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2141
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0478 + 19514509-19514940,19515749-19515820,19515954-195159...    28   5.0  
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420...    28   5.0  
11_04_0216 - 14954047-14956098                                         27   8.7  
04_04_1017 - 30144844-30144855,30145163-30145228,30145383-301454...    27   8.7  
04_04_1010 - 30084141-30084152,30084460-30084525,30084680-300847...    27   8.7  
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494...    27   8.7  
01_04_0095 + 15979884-15980234                                         27   8.7  

>12_02_0478 +
           19514509-19514940,19515749-19515820,19515954-19515986,
           19516169-19516830,19516905-19517045,19518634-19518830,
           19518878-19518965,19518987-19519041,19519501-19519571,
           19519709-19519763,19519881-19519896,19520286-19520361,
           19521202-19521240,19521312-19521333
          Length = 652

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 53  LAVLVCAFCDCSSRLL-FLRHTPHILLQSHMQLLPWYMLLRLLIXYTL 193
           LA+L+C  C CS +LL FL  TP +     + ++ +Y L+ L + + +
Sbjct: 578 LAILICRICSCSEQLLSFL--TPPLY---EVSIINYYDLISLQVNHIM 620


>01_03_0012 +
           11638363-11638476,11638854-11640678,11641855-11642096,
           11642198-11642327,11642464-11642774
          Length = 873

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -3

Query: 358 NDVAIAGLVLSXRVTS*TVLHVVSEAVLRMSVVFLDFSDRGDSGNLANGRRTLRD*RVXD 179
           +DV   G VL   +T  TV ++ S  V  ++  FLD      S  ++ G++   +    D
Sbjct: 591 SDVYSFGAVLLELITWKTVRYMSSGRVHMLTKDFLDTYRIDHSAAISFGKKVYDEQASGD 650

Query: 178 EQPEQHV 158
            +P QHV
Sbjct: 651 NKPNQHV 657


>11_04_0216 - 14954047-14956098
          Length = 683

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 47  LKLAVLVCAFCDCSSRLLFLRHTPHILLQSHMQL-LPWY 160
           L++  ++   CD     L L H P +L   H +L LPW+
Sbjct: 151 LRVGEIMGELCDTGDSCLILEHKPAVLF-DHTELELPWH 188


>04_04_1017 -
           30144844-30144855,30145163-30145228,30145383-30145431,
           30145594-30145661,30145764-30145809,30146114-30146207,
           30146290-30146352,30146532-30146654,30146761-30146794,
           30147050-30147175,30147328-30147384
          Length = 245

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 26  IYLCSNGLKLAVLVCAFCDCSSRLLFLRHTPHILLQSHMQLLPWY 160
           I LC +   +AV+VC   +  S+L FL  T + LL   +  L WY
Sbjct: 115 IVLCLSWNFIAVIVCWIKEGDSKLFFLA-TIYALLGIPLSYLIWY 158


>04_04_1010 -
           30084141-30084152,30084460-30084525,30084680-30084728,
           30084891-30084958,30085061-30085106,30085411-30085504,
           30085587-30085649,30085829-30085951,30086058-30086091,
           30086347-30086472,30086625-30086681
          Length = 245

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 26  IYLCSNGLKLAVLVCAFCDCSSRLLFLRHTPHILLQSHMQLLPWY 160
           I LC +   +AV+VC   +  S+L FL  T + LL   +  L WY
Sbjct: 115 IVLCLSWNFIAVIVCWIKEGDSKLFFLA-TIYALLGIPLSYLIWY 158


>03_05_0780 +
           27646936-27647084,27647168-27647289,27649380-27649458,
           27650346-27650427,27650483-27650600,27650695-27651050,
           27651404-27652222,27652846-27653265,27653426-27653437
          Length = 718

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 391 HQAHRXLHRRPPNGXNAVVHKEPLAHVAKVAKIAGPLTYAGGPLVHXAPRCAXRS-IXDA 567
           HQ H  L R   +    ++H+  L+H + +  +A PL  +  P    AP    R  +  A
Sbjct: 372 HQGHLLLCRPCLSHRTGLLHRTRLSHRSGLPPLAAPLAPSRPPSPPPAPLAPSRPLLPSA 431

Query: 568 VP 573
           VP
Sbjct: 432 VP 433


>01_04_0095 + 15979884-15980234
          Length = 116

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 495 PFDLRRRSPCAXRAPLCTPXYXGCRSR 575
           P DLR R PC   +P+ +P    CR+R
Sbjct: 25  PMDLRCRCPCPGASPMASPC---CRTR 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,793,590
Number of Sequences: 37544
Number of extensions: 216748
Number of successful extensions: 593
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)