Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2141
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.75 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.2  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 353 VVQGSYSVVDPDGTKRTVDYTAD 421
           V QGS S   PDG + ++ Y AD
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVAD 92


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/38 (23%), Positives = 20/38 (52%)
 Frame = -3

Query: 178 EQPEQHVPREQLHMRLEQDVRCMPQEQKPARTVAKCAD 65
           +Q +Q   ++Q   + +Q  +  P E++PA +    +D
Sbjct: 442 QQQQQQQQQQQQQQQQQQQQQHWPMEEEPAASWGSASD 479


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 111 CRRNKSLLEQSQNAQTRTASLRPLL 37
           CR +  +L+ S+N  TR     PLL
Sbjct: 210 CRADIRILDLSRNEITRLQENSPLL 234


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -1

Query: 582 VXXGNGIXNRXXCTTGRGVHKGTSGVGQ 499
           V   NG  +   C T R  H   SG+ +
Sbjct: 370 VHYSNGQTHSQLCPTPRSTHLKVSGINR 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,084
Number of Sequences: 438
Number of extensions: 1781
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)