Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2137
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.45 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.4  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   3.2  
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    26   5.5  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    25   7.3  
SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.7  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   9.7  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.5 bits (63), Expect = 0.45
 Identities = 21/49 (42%), Positives = 29/49 (59%)
 Frame = -3

Query: 346 TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEA 200
           TY+   I SS+ L+   S L++++S  +ASSS  PI   SSS VS   A
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 276 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 371
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 532 QRLFSSTPSISREPW-SSKFDERLTSDRDFLREQRQNNQSTH 654
           ++LF S PSI +  W  ++F  R T  ++  R     NQS++
Sbjct: 197 KKLFGSEPSIEKTNWIEAEFTRRHTKRKEKERACLSQNQSSN 238


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 544 SSTPSISREPWSSKFD 591
           + TP I  EPW  KFD
Sbjct: 128 AKTPEIQDEPWKPKFD 143


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 435 NTVAAKSINDWVEENTNXRIKDLVNPDSLS 524
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


>SPBC1289.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 63  NLSNVLKNGNDNFTARMFTEVV 128
           N  N+LK  ND   AR +TE V
Sbjct: 56  NSQNLLKQLNDEMKARKYTETV 77


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 19/82 (23%), Positives = 41/82 (50%)
 Frame = -3

Query: 322 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAERTMLF 143
           SS P + + +  + + SV  +S  G+P +  SSS  S  + ++       + N E+++  
Sbjct: 95  SSNPRMPKSAHPISSRSVSASSHFGRPASAVSSSLNSSDDVRSMSDESMESYNDEKSVNA 154

Query: 142 PGLFFTTSVNILAVKLSFPFLS 77
             L  TT   + ++++++  LS
Sbjct: 155 SAL-RTTEDRLRSMEMAYAQLS 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,447
Number of Sequences: 5004
Number of extensions: 46478
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)