Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2137
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 66 2e-11
01_01_1152 + 9170628-9171899 60 2e-09
11_02_0011 - 7337618-7338496,7338596-7338991 55 4e-08
11_02_0012 - 7346282-7347136,7347234-7347593 52 5e-07
11_01_0750 - 6315126-6315896,6316371-6316784 48 9e-06
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 46 2e-05
11_01_0767 + 6438648-6438809,6439146-6440000 45 6e-05
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 44 8e-05
11_02_0014 - 7352619-7352918,7353173-7353418 44 1e-04
11_01_0771 + 6453130-6454488 44 1e-04
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 1.9
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 2.5
05_05_0373 - 24478361-24479383 29 2.5
02_01_0384 - 2781362-2782299,2782320-2782428 29 3.3
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 4.3
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 5.7
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 28 7.6
05_06_0044 - 25150322-25151260 28 7.6
01_06_0373 - 28841462-28842850 28 7.6
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 66.1 bits (154), Expect = 2e-11
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Frame = +3
Query: 144 KSIVLSAFSVLPPLAQLALASDGETHEELLKAIG---FPDDDAIRTE-----FASKSRDL 299
K++ +S S+ LA L + GET ++++ +G P A+ + A S
Sbjct: 32 KNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGPG 91
Query: 300 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 476
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E
Sbjct: 92 DDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFES 151
Query: 477 NTNXRIKDLVNPDSLSSATAAVLVNAIYFKGAME 578
T RIKD + D++ AT AVL NA+YFKG E
Sbjct: 152 ATAGRIKDFLPKDAVDRATPAVLGNALYFKGDWE 185
>01_01_1152 + 9170628-9171899
Length = 423
Score = 60.1 bits (139), Expect = 2e-09
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Frame = +3
Query: 141 GKSIVLSAFSVLPPLAQLALASDGETHEELLKAIGFPD-DDAIRTEFASKSRDLRSIKGV 317
G++ ++S S LA +A + GET ELL +G P + R+ LR +
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNT 117
Query: 318 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNXRI 494
A V+V G L FA + + + + DF+ A+ +N +V + T I
Sbjct: 118 SF--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLI 175
Query: 495 KDLVNPDSLSSATAAVLVNAIYFKG 569
+D++ P+S+ S+T VL NA++FKG
Sbjct: 176 RDVLPPNSVDSSTVVVLANAVHFKG 200
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 55.2 bits (127), Expect = 4e-08
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 5/147 (3%)
Frame = +3
Query: 144 KSIVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDLRSIK 311
K++V S S+ LA +A + G T +ELL +G DD +++R D +
Sbjct: 31 KNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESASG 90
Query: 312 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNX 488
G + A V+ + +L + + + + + +F + + K IN WV + TN
Sbjct: 91 GPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNK 150
Query: 489 RIKDLVNPDSLSSATAAVLVNAIYFKG 569
I +++ S+ TA VLVNAIYFKG
Sbjct: 151 LIPEILPDGSVHVDTALVLVNAIYFKG 177
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 51.6 bits (118), Expect = 5e-07
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Frame = +3
Query: 132 NNPGKSIVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDL 299
+N +++V S S+ LA +A + G T +EL+ +G DD +++R D
Sbjct: 27 DNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESVRRAVEVGLADE 86
Query: 300 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEE 476
G + A V+ HD E A+ + + + DF + ++ K IN WV +
Sbjct: 87 SESGGPRVSYACGVW-HD-----ERLAL--KPAYRA----ADFQRQPKSSRKKINKWVSK 134
Query: 477 NTNXRIKDLVNPDSLSSATAAVLVNAIYFKG 569
TN I++++ S+ TA VLVNAIYFKG
Sbjct: 135 ATNKLIREILPDGSVHGGTALVLVNAIYFKG 165
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 47.6 bits (108), Expect = 9e-06
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Frame = +3
Query: 156 LSAFSVLPPLAQLALASDGETHEELLKAIGFPDDD----AIRTEFASKS-----RDLRSI 308
+SA +V LA A + G T ++L+A+G A AS+ RD +
Sbjct: 36 VSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDRSTS 95
Query: 309 KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTN 485
G L A V+ L F ++ +V+ S + DF +K A IN WV+++T
Sbjct: 96 GGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTK 155
Query: 486 XRIKDLVNPDSLSSATAAVLVNAIYFKG 569
+ L+ ++ T VL +A+YF+G
Sbjct: 156 GTVTTLLPAGTIDQNTGLVLGSALYFRG 183
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +3
Query: 432 KNTVAAKSINDWVEENTNXRIKDLVNPDSLSSATAAVLVNAIYFKGA 572
K A +N WVE+ T+ IK+++ P S+ T VL NA+YFKGA
Sbjct: 209 KAAEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGA 255
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 456 INDWVEENTNXRIKDLVNPDSLSSATAAVLVNAIYFKGA 572
+N WV+ T+ IK++ P S++ T VL NA+YFKGA
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGA 507
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 399 FNSDVQNIDFSKNTVAA-KSINDWVEENTNXRIKDLVNPDSLSSATAAVLVNAIYFKG 569
+ +DF + V A K IN WV T I +++ P+S S T V+ NAIYFKG
Sbjct: 42 YKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKG 99
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 44.4 bits (100), Expect = 8e-05
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +3
Query: 447 AKSINDWVEENTNXRIKDLVNPDSLSSATAAVLVNAIYFKGA 572
A +N WV+ T+ IK+++ P S+ T VL NA+YFKGA
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGA 47
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +3
Query: 450 KSINDWVEENTNXRIKDLVNPDSLSSATAAVLVNAIYFKG 569
K IN+WV + TN I +++ S+ T VLVNAIYFKG
Sbjct: 88 KKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKG 127
>11_01_0771 + 6453130-6454488
Length = 452
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/69 (34%), Positives = 34/69 (49%)
Frame = +3
Query: 363 LDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNXRIKDLVNPDSLSSATAAV 542
+D ++ + + V ++ K A K IN W T I D++ P S+ TA V
Sbjct: 146 IDAFILLLDPSMIDQCVLDLVSEKAEEARKQINAWARRATGKLITDVLPPRSVGPETAVV 205
Query: 543 LVNAIYFKG 569
L NAIYFKG
Sbjct: 206 LGNAIYFKG 214
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 335 VRHFKLNAFN*SKVTAFTREFCSYSIVVREADSFQKLFMGFTIRS 201
VRH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +3
Query: 252 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 377
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>05_05_0373 - 24478361-24479383
Length = 340
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 441 VAAKSINDWVEENTNXRIKDLVNPDSLSSATAAVLV 548
VA + +DW E + ++ D V PD+LSS AAV +
Sbjct: 153 VALREPHDWGESTAHAQL-DAVAPDALSSCDAAVFL 187
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 322 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 155
S++P R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 211 SASPASPSRTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 270 TEFASKSRDLRSIKGVELKMANKVYVHDG 356
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 310 LIDRRSRLLLANSVRIASSSGK 245
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.9 bits (59), Expect = 7.6
Identities = 22/88 (25%), Positives = 39/88 (44%)
Frame = +3
Query: 270 TEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA 449
T+ S S+D++ ++ V+ + N VHDG L + N V+ +D N A
Sbjct: 139 TQIPSASKDIKEVRAVDEFLPNDFVVHDGLLL---------AIQNEPVEPVDKDVNQFAQ 189
Query: 450 KSINDWVEENTNXRIKDLVNPDSLSSAT 533
+ EEN+ + + N D + S +
Sbjct: 190 EDKTIQGEENSPVPLHYVDNYDVIQSVS 217
>05_06_0044 - 25150322-25151260
Length = 312
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 339 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNXRIKDLVN 509
V+V +L+ FA + VF + V++ + N AA++ IN+W T +KD+++
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRS---AGNPAAARAEINEWFSSQTGGFVKDILS 57
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 153 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 296
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,561,320
Number of Sequences: 37544
Number of extensions: 295422
Number of successful extensions: 869
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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