Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2136
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      183   1e-46
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    33   0.17 
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.2  
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443...    29   3.8  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   3.8  
04_01_0618 - 8094991-8097288                                           28   5.0  
11_01_0787 + 6578158-6579287,6579439-6580870,6581087-6581097,658...    27   8.7  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  183 bits (445), Expect = 1e-46
 Identities = 95/194 (48%), Positives = 128/194 (65%), Gaps = 1/194 (0%)
 Frame = +3

Query: 3   QRRGAGSVF-GFSHXRRGKALPKLRSLDYG*TSWXHQGSC*GI*SMTLVEVHLWLLYTFR 179
           QR+GAGSVF   +H R+G A  + RSLD+G  +   +G    I         L  + TFR
Sbjct: 8   QRKGAGSVFKSHTHHRKGPA--RFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKV-TFR 64

Query: 180 DPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEXKMGDRG 359
            P+++K +KELF+A EG+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +GDRG
Sbjct: 65  HPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRG 124

Query: 360 RLARAXGNFATVIGHNPDAKRTRSKATRLEPRKVLPSSNRXMXXXXXXXXRIDKPILKAG 539
             ARA G++A VI HNPD   +R K      +K++PSS R M        R +KP+LKAG
Sbjct: 125 VFARASGDYAIVISHNPDNGTSRIKLPS-GAKKIVPSSCRAMIGQVAGGGRTEKPMLKAG 183

Query: 540 RAYPKXKVKRNCWP 581
            AY K +VKRNCWP
Sbjct: 184 NAYHKYRVKRNCWP 197



 Score = 35.5 bits (78), Expect = 0.033
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 116 LLRDIIHDPGRGAPLAVVHF 175
           ++ DIIHDPGRGAPLA V F
Sbjct: 44  VVTDIIHDPGRGAPLAKVTF 63


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 500 WRWTY*QTYFESWKGIPQVQG 562
           W WTY  T+F SW  +P +QG
Sbjct: 70  WSWTYWSTFFLSWSIVPTLQG 90


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 374 LWKLRHCDWT 403
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>02_05_0812 +
           31942591-31942758,31943415-31943491,31944169-31944327,
           31944559-31944772,31944849-31944935,31945022-31945161,
           31945380-31945460,31945948-31946012,31946219-31946394,
           31947212-31947342,31947438-31947525,31947671-31947884,
           31948206-31948312,31948456-31948953
          Length = 734

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 500 WRWTY*QTYFESWKGIPQVQG 562
           W W+Y  T+  +W  +P +QG
Sbjct: 70  WSWSYWSTFILTWAVVPTIQG 90


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -1

Query: 405 CVQSQWRSFXRHVPDDLYHPFSXQDCTQWY 316
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>04_01_0618 - 8094991-8097288
          Length = 765

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 155 PLAV-VHFPRSIQVQDKEGALHCSRRALHRPICLLW 259
           PLAV     R  Q+ D++  + C+ R   +P CLLW
Sbjct: 425 PLAVWPATDRRNQMVDQQSVIWCAARMTKKPNCLLW 460


>11_01_0787 +
           6578158-6579287,6579439-6580870,6581087-6581097,
           6581525-6582125,6583981-6585054,6585745-6585873,
           6585925-6585963
          Length = 1471

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = +2

Query: 68  TSLFRLRLNVMDXSRELLRDIIHDPGRGAPLAVVHFPRSIQVQDKEGALHCSRRALHRPI 247
           ++L  LRLN M  S+ L+ D    P     L ++H P   Q+   +GAL C    L+  I
Sbjct: 750 SNLTYLRLNNMHSSKTLVLDAEAFPHLKT-LVLMHMPDVNQINITDGALPCI-EGLY--I 805

Query: 248 CLLWK 262
             LWK
Sbjct: 806 VSLWK 810


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,713
Number of Sequences: 37544
Number of extensions: 315551
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)