Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2135
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.86 
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    28   1.5  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    27   2.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.0  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   4.6  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.6  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    25   8.0  

>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +3

Query: 39  LLSLENITPMDQFKSWRLTIITTPSLTTANTMTRKSLIKCSSGSSLETRSLKATLKLLSI 218
           + +L+  T   Q  S      + P+LTT+NT  + S    SS   +E+ S+  +    + 
Sbjct: 273 ITTLQTATTAQQTTSENTYSTSGPNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTT 332

Query: 219 ISSRNTPKR*TL 254
           I++ +TP   T+
Sbjct: 333 ITNASTPAANTI 344


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 3   PTTPIK-PQS*QSLLSLENITPMDQFKSWRLTIITTPSLTTANTMTRKSL 149
           PTTP K P+     ++    T ++   S+RL + T+P+L   N   RKSL
Sbjct: 152 PTTPSKNPEP----VAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSL 197


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +2

Query: 443 LHSQPITGMTIFFAIFP*CQFGLKFFAFVKDRFAXMGLFKIARIF-CLDFYL 595
           LH+          + F  C FGL FF ++   ++  G F    +F  L+FY+
Sbjct: 4   LHTSIAVASICLTSAFLGCVFGLGFFVWIIYGYSIGGFFAFLSLFHLLEFYI 55


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 185  KLEGDAKTAVDNFIKEHSKEIDSSKLVHTDFSEE 286
            K+EGDAKT  DN +++  K  D  K    D++EE
Sbjct: 1306 KIEGDAKTGDDNEMEDLDKMEDLEK---PDYAEE 1336


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 236 SKEIDSSKLVHTDFSEEACKFTSSSVITEHGKH 334
           +KEI+SSK   TD   E   FT  +  + +  H
Sbjct: 96  AKEIESSKNQETDAKSEQAPFTEDASSSNYAHH 128


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 595 TNKELFTIYFDSNKLDIDG 651
           TN+E+ T+    NKLD+DG
Sbjct: 14  TNEEILTLTDQFNKLDVDG 32


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 155 LDETFSCHRICSCKRWRSYYSQSP 84
           L E    H+ C+ K W   YS+ P
Sbjct: 439 LVEVILAHKNCTLKEWNQLYSEIP 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,536
Number of Sequences: 5004
Number of extensions: 57570
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)