Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2135
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0608 + 4471738-4472115                                           29   2.7  
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366...    29   4.8  
04_04_0251 + 23930789-23930960,23931065-23931128,23931641-239317...    28   8.3  
03_01_0347 - 2730242-2730425,2730541-2730692,2730782-2730940,273...    28   8.3  
02_01_0704 - 5254458-5254760,5255091-5255182,5255285-5255501,525...    28   8.3  

>03_01_0608 + 4471738-4472115
          Length = 125

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 200 RRLQASCF*RGSRRTLDETFSCHRICSCKR 111
           +RL+A+   RG  ++ DE F C R+C+ KR
Sbjct: 32  QRLKAA---RGREKSSDEVFVCERVCTSKR 58


>05_01_0463 -
           3666626-3666933,3667060-3667258,3667388-3667629,
           3667823-3669035
          Length = 653

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 119 NCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDN 220
           +CK D     H  +  +   N+ LEGD ++ +DN
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDN 589


>04_04_0251 +
           23930789-23930960,23931065-23931128,23931641-23931747,
           23931832-23931899,23932068-23932097,23932357-23932460,
           23932558-23932662,23932815-23932904,23932982-23933057,
           23933292-23933361,23933799-23933869,23933945-23934035,
           23934192-23934319,23934547-23934675,23934762-23934902
          Length = 481

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +3

Query: 57  ITPMDQFKSW-RLTIITTPSLTTA 125
           +T MD+ KSW  + I+TT ++TTA
Sbjct: 325 LTQMDKLKSWPNVIILTTSNITTA 348


>03_01_0347 -
           2730242-2730425,2730541-2730692,2730782-2730940,
           2734144-2734618,2734713-2734775,2734870-2735078
          Length = 413

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +2

Query: 503 FGLKFFAFVKDRFAXMGLFKIARIFCLDFYLP--IKNFSPFILIVI 634
           FGLKF+  V   FA  G    A+++C +   P  +  F+P   I++
Sbjct: 292 FGLKFWCIVYSGFACNGFTVFAQLWCTEKKGPVFVTMFNPLSTIMV 337


>02_01_0704 -
           5254458-5254760,5255091-5255182,5255285-5255501,
           5255972-5256068,5256175-5256415,5257100-5257180,
           5257236-5257383
          Length = 392

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 279 QRKXXXXXXXXXXXXTENIKTEKILEALRGIKLNSNHSIKI 401
           QRK            TEN + E++ E+L G+K +++ ++ +
Sbjct: 167 QRKAVVANRKRTARPTENARPEQLAESLEGVKTDTDRNVSV 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,047,970
Number of Sequences: 37544
Number of extensions: 318282
Number of successful extensions: 799
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)