Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2135
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    31   0.80 
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    31   0.80 
U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z82272-4|CAB05221.1|  342|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 101 NYAIAYNCKYDD--KKKSHQVFVWILSRNK 184
           NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 73  NYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 101 NYAIAYNCKYDD--KKKSHQVFVWILSRNK 184
           NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 73  NYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 101 NYAIAYNCKYDD--KKKSHQVFVWILSRNK 184
           NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 73  NYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical
           protein C31H1.8 protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 137 KKKSHQVFVWILSRNKKLEGDAKTAVDNFIKEHSK 241
           K  S  V+  + SRN+KLE   + A+D+F++  SK
Sbjct: 240 KMHSDYVYAIVHSRNEKLERRLRGAIDSFMEIESK 274


>AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical
           protein Y57A10A.4 protein.
          Length = 629

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 27/90 (30%), Positives = 40/90 (44%)
 Frame = +2

Query: 35  VTFKFGEYHADGSVQVLATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAV 214
           V  +F E   DG      + Y +YA  +N    +  K  +    I  R + + G A    
Sbjct: 31  VLTEFSESENDG-----LSHYAHYAKFHNYLVPNMAKLAEYS--IEERVRVIFGFAAVVS 83

Query: 215 DNFIKEHSKEIDSSKLVHTDFSEEACKFTS 304
           D+F+K+  +E     LVH D  +  CKFTS
Sbjct: 84  DDFLKQIQRE----GLVHLDKKKRICKFTS 109


>Z83116-3|CAB05561.1|  284|Caenorhabditis elegans Hypothetical
           protein M01B2.3 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 369 IKLNSNHSIKINIGFWFYW*NLTVNSIASLL 461
           I L++N  IK N+ FW  W + ++ S+ SLL
Sbjct: 69  ISLSANFIIK-NLTFWLVWASTSIGSMRSLL 98


>Z82272-4|CAB05221.1|  342|Caenorhabditis elegans Hypothetical
           protein F55G11.7 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 425 PIKPKPYVNLNTVVTIQFDSPQCFKYLFSLNVFRVRLSRWSW 300
           P+ PK Y +L +  T+ FD   C  + +  N++++  ++  W
Sbjct: 174 PVNPKNYYSLRS--TLVFDGHDCTSFNYISNLYQLYQTKEQW 213


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +3

Query: 3   PTTPIKPQS*QSLLSLENITPMDQFKSWRLTIITTPSLTTANTMTRKSLIKCSSGSSLET 182
           PTT   P +  S  +    T   Q  +   T  TTP+ T   T T  +    +  +   T
Sbjct: 241 PTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTT 300

Query: 183 RSLKATLKLLSIISSRNTPK 242
            + K T    +  ++  TPK
Sbjct: 301 TTTKTTKTTSTPTTTTTTPK 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,098
Number of Sequences: 27780
Number of extensions: 306619
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)