Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2132
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   182   3e-47
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   182   4e-47
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1...    28   0.99 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.3  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   7.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   9.2  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  182 bits (444), Expect = 3e-47
 Identities = 93/151 (61%), Positives = 106/151 (70%)
 Frame = +3

Query: 63  VPDPKNPYLSIWVRRERTG*RLFHLCVHFGVRRI*TAELKRLLEAGRICCNKYLVKNCGK 242
           VPD K     +   R+R G   F LC+H  V           LEA RIC NKYLVK  GK
Sbjct: 26  VPDSKIRIFDLG--RKRAGVDEFPLCIHL-VSNEYEQITSEALEAARICANKYLVKIGGK 82

Query: 243 DQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSD 422
           D FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D
Sbjct: 83  DSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKD 142

Query: 423 RWKAQVIEALRRAKFKFPGRQKIYVSKKWGF 515
             +A  IEALRR ++KFPG+Q+I VSKKWGF
Sbjct: 143 SSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 10/211 (4%)
 Frame = +1

Query: 7   CXRXCKNKPYPKSKVLSGVXLIPRIRIFXFG*EESGPVDDFSTCACTLVSDEYEQLSSKG 186
           C R CKNKPYPKS+    V    +IRIF  G + +G VD+F  C   LVS+EYEQ++S+ 
Sbjct: 8   CYRYCKNKPYPKSRYNRAVP-DSKIRIFDLGRKRAG-VDEFPLC-IHLVSNEYEQITSEA 64

Query: 187 FWRQDVSA---AISTS*RTAERISSISA*DFTLSTLSASIKCYHALEL-------IGSRL 336
                + A    +    + +  +  + A  F +  ++  + C  A  L        G   
Sbjct: 65  LEAARICANKYLVKIGGKDSFHL-RVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPN 123

Query: 337 GCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGGF 516
           G V R+   +VL  V   DS              + R C       P  +R    +  GF
Sbjct: 124 GLVARVNIGQVLMSVRTKDSSRATAI-------EALRRC---QYKFPGQQRIIVSKKWGF 173

Query: 517 TKYERDEFEKLREXGRLANDGCIVXYRPEHG 609
           ++Y RDE+ + R  G +  DGC   +  + G
Sbjct: 174 SQYARDEYIEKRSRGEIIPDGCYAKFLNKRG 204


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  182 bits (443), Expect = 4e-47
 Identities = 93/151 (61%), Positives = 106/151 (70%)
 Frame = +3

Query: 63  VPDPKNPYLSIWVRRERTG*RLFHLCVHFGVRRI*TAELKRLLEAGRICCNKYLVKNCGK 242
           VPD K     +   R+R G   F LC+H  V           LEA RIC NKYLVK  GK
Sbjct: 26  VPDSKIRIFDLG--RKRAGVDEFPLCIHL-VSNEYEQITSEALEAARICANKYLVKIGGK 82

Query: 243 DQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSD 422
           D FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+ D
Sbjct: 83  DSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKD 142

Query: 423 RWKAQVIEALRRAKFKFPGRQKIYVSKKWGF 515
             +A  IEALRR ++KFPG+Q+I VSKKWGF
Sbjct: 143 SSRATAIEALRRCQYKFPGQQRIIVSKKWGF 173



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 60/211 (28%), Positives = 92/211 (43%), Gaps = 10/211 (4%)
 Frame = +1

Query: 7   CXRXCKNKPYPKSKVLSGVXLIPRIRIFXFG*EESGPVDDFSTCACTLVSDEYEQLSSKG 186
           C R CKNKPYPKS+    V    +IRIF  G + +G VD+F  C   LVS+EYEQ++S+ 
Sbjct: 8   CYRYCKNKPYPKSRYNRAVP-DSKIRIFDLGRKRAG-VDEFPLC-IHLVSNEYEQITSEA 64

Query: 187 FWRQDVSA---AISTS*RTAERISSISA*DFTLSTLSASIKCYHALEL-------IGSRL 336
                + A    +    + +  +  + A  F +  ++  + C  A  L        G   
Sbjct: 65  LEAARICANKYLVKIGGKDSFHL-RVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPN 123

Query: 337 GCVVRLASLRVL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGGF 516
           G V R+   ++L  V   DS              + R C       P  +R    +  GF
Sbjct: 124 GLVARVNIGQILMSVRTKDSSRATAI-------EALRRC---QYKFPGQQRIIVSKKWGF 173

Query: 517 TKYERDEFEKLREXGRLANDGCIVXYRPEHG 609
           ++Y RDE+ + R  G +  DGC   +  + G
Sbjct: 174 SQYARDEYIEKRSRGEIIPDGCYAKFLNKRG 204


>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
           L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
 Frame = +3

Query: 267 LHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQPIMSVRSSDRWKA 434
           L P    R+     C        G     GK +G      AR+ IG+ +  +      K 
Sbjct: 100 LKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGRVLFEIGGDGMRKE 158

Query: 435 QVIEALRRAKFKFPGRQKIYVSK 503
               AL++A F  PG+ +I V +
Sbjct: 159 LAEHALKQAAFHLPGKYEIIVKQ 181


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 371  STLRLAKRTTHPSLEPISSS 312
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 173  SCS-YSSDTKVHAQVEKSSTGPLSSYPNXKIRILGI 69
            +CS +  D  +   VEKS +GP+S +   + +  GI
Sbjct: 897  ACSIFGEDALMSLSVEKSVSGPISGHVRIRSKTQGI 932


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 240 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 344
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 190 KSLLSSAVHIRRTPKCTHKWKSRQPVRSLL 101
           K ++  A+++R  PK    W S QP  +LL
Sbjct: 63  KWIIIDAIYLRLLPKFRIPWLSFQPAATLL 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,744
Number of Sequences: 5004
Number of extensions: 58411
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)