Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2132
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 185 3e-47
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 183 9e-47
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 177 5e-45
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.0
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 5.4
07_03_1509 - 27246721-27247350 28 5.4
04_04_0717 - 27525117-27525248,27525384-27525549,27525629-275258... 28 5.4
09_06_0319 - 22293869-22293906,22294539-22295808 27 9.5
08_02_0567 + 18769742-18769790,18769928-18771351 27 9.5
06_02_0084 - 11547820-11548773 27 9.5
01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387 27 9.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 185 bits (450), Expect = 3e-47
Identities = 94/154 (61%), Positives = 108/154 (70%)
Frame = +3
Query: 60 GVPDPKNPYLSIWVRRERTG*RLFHLCVHFGVRRI*TAELKRLLEAGRICCNKYLVKNCG 239
GVPDPK + ++++ G F CVH V LEA RI CNKY+ KN G
Sbjct: 25 GVPDPKIRIYDVGMKKK--GVDEFPYCVHL-VSWEKENVSSEALEAARIACNKYMTKNAG 81
Query: 240 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 419
KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 82 KDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCK 141
Query: 420 DRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFHK 521
+ EALRRAKFKFPGRQKI S+KWGF K
Sbjct: 142 ESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTK 175
Score = 54.8 bits (126), Expect = 5e-08
Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 12/213 (5%)
Frame = +1
Query: 7 CXRXCKNKPYPKSKVLSGVXLIPRIRIFXFG*EESGPVDDFSTCACTLVSDEYEQLSSKG 186
C R KNKPYPKS+ GV P+IRI+ G ++ G VD+F C LVS E E +SS+
Sbjct: 8 CYRQIKNKPYPKSRYCRGVP-DPKIRIYDVGMKKKG-VDEFPYCV-HLVSWEKENVSSEA 64
Query: 187 FWRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVVRLASLR 366
+A I+ + + L + +H L I L C A
Sbjct: 65 L----EAARIACNKYMTKNAGK------DAFHLRVRVHPFHVLR-INKMLSCAG--ADRL 111
Query: 367 VL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPD--VKRSTYQ----------RSG 510
A P CA V G+ S C ++ + ++R+ ++ R
Sbjct: 112 QTGMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKW 171
Query: 511 GFTKYERDEFEKLREXGRLANDGCIVXYRPEHG 609
GFTK+ R+E+ KL+ GR+ +DG HG
Sbjct: 172 GFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHG 204
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 183 bits (446), Expect = 9e-47
Identities = 93/154 (60%), Positives = 107/154 (69%)
Frame = +3
Query: 60 GVPDPKNPYLSIWVRRERTG*RLFHLCVHFGVRRI*TAELKRLLEAGRICCNKYLVKNCG 239
GVPDPK + ++++ G F CVH V LEA RI CNKY+ K+ G
Sbjct: 21 GVPDPKIRIYDVGMKKK--GVDEFSHCVHL-VSWEKENVTSEALEAARIACNKYMTKSAG 77
Query: 240 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 419
KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++SVR
Sbjct: 78 KDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCK 137
Query: 420 DRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFHK 521
EALRRAKFKFPGRQKI S+KWGF K
Sbjct: 138 PNNAVHASEALRRAKFKFPGRQKIIESRKWGFTK 171
Score = 56.4 bits (130), Expect = 2e-08
Identities = 64/203 (31%), Positives = 89/203 (43%), Gaps = 12/203 (5%)
Frame = +1
Query: 7 CXRXCKNKPYPKSKVLSGVXLIPRIRIFXFG*EESGPVDDFSTCACTLVSDEYEQLSSKG 186
C R KNKPYPKS+ GV P+IRI+ G ++ G VD+FS C LVS E E ++S+
Sbjct: 4 CYRQIKNKPYPKSRYCRGVP-DPKIRIYDVGMKKKG-VDEFSHCV-HLVSWEKENVTSE- 59
Query: 187 FWRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVVRLASLR 366
A+ + + + SA L + +H L I L C A
Sbjct: 60 --------ALEAARIACNKYMTKSAGKDAFH-LRVRVHPFHVLR-INKMLSCAG--ADRL 107
Query: 367 VL*HVFALDSPSCPCALVTGGRHRSSRLC----AVPSSSS--------PDVKRSTYQRSG 510
A P CA V G+ S C AV +S + P ++ R
Sbjct: 108 QTGMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKW 167
Query: 511 GFTKYERDEFEKLREXGRLANDG 579
GFTK+ RDE+ +L+ GR+ DG
Sbjct: 168 GFTKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 177 bits (432), Expect = 5e-45
Identities = 90/152 (59%), Positives = 103/152 (67%)
Frame = +3
Query: 60 GVPDPKNPYLSIWVRRERTG*RLFHLCVHFGVRRI*TAELKRLLEAGRICCNKYLVKNCG 239
GVPDPK + ++ F LCVH V LEA RI CNKY+ K+ G
Sbjct: 332 GVPDPKIRIFDVGQKKRSADD--FPLCVHL-VSWEKENVSSEALEAARIACNKYMAKHAG 388
Query: 240 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 419
KD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++SVR
Sbjct: 389 KDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLSVRCR 448
Query: 420 DRWKAQVIEALRRAKFKFPGRQKIYVSKKWGF 515
D A EALRRAKFKFPGRQ++ S KWGF
Sbjct: 449 DANAAHAQEALRRAKFKFPGRQRVIFSAKWGF 480
Score = 58.0 bits (134), Expect = 6e-09
Identities = 65/213 (30%), Positives = 90/213 (42%), Gaps = 12/213 (5%)
Frame = +1
Query: 7 CXRXCKNKPYPKSKVLSGVXLIPRIRIFXFG*EESGPVDDFSTCACTLVSDEYEQLSSKG 186
C R KNKPYPKS+ GV P+IRIF G ++ DDF C LVS E E +SS+
Sbjct: 315 CYRQIKNKPYPKSRYCRGVP-DPKIRIFDVG-QKKRSADDFPLCV-HLVSWEKENVSSEA 371
Query: 187 FWRQDVSAAISTS*RTAERISSISA*DFTLSTLSASIKCYHALELIGSRLGCVVRLASLR 366
+A I+ + A+ + F L + YH L I L C A
Sbjct: 372 L----EAARIACNKYMAKHAGKDA---FHLRVCAHP---YHVLR-INKMLSCAG--ADRL 418
Query: 367 VL*HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSS------------PDVKRSTYQRSG 510
A P+ CA V G+ S C +++ P +R +
Sbjct: 419 QTGMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKW 478
Query: 511 GFTKYERDEFEKLREXGRLANDGCIVXYRPEHG 609
GFT+++RDE+ KL+ GR+ DG HG
Sbjct: 479 GFTRFKRDEYLKLKSEGRIVPDGVNAKLLTRHG 511
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 400 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 308
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 354 GKPQGTVARVRIGQPIMSVRSSD 422
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>07_03_1509 - 27246721-27247350
Length = 209
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 388 LDSPSCPCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSG 510
L P PC RH RL +P +SSSP+++R+T R+G
Sbjct: 132 LQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAG 177
>04_04_0717 -
27525117-27525248,27525384-27525549,27525629-27525831,
27525911-27526048,27526642-27526725,27526864-27526950,
27527048-27527120,27527169-27527432,27527692-27527768,
27527886-27527957,27528049-27528209,27528238-27528484,
27528588-27528707,27528846-27528929,27529205-27529341,
27529689-27529856,27530093-27530317,27530865-27530952,
27531033-27531194,27532797-27532919
Length = 936
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 436 RSSRLCAVPS-SSSPDVKRSTYQRSGGFTKYERDEFEKLREXGRLANDGCI 585
+S C S +SSP + Q+ G ERD L E G + GC+
Sbjct: 101 KSRSFCKSGSPNSSPGSGHNNVQKDGTCAPIERDTLRSLVESGATESSGCL 151
>09_06_0319 - 22293869-22293906,22294539-22295808
Length = 435
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 354 GKPQGTVARVRIGQPIMSVRSSD 422
G PQ T+ R+ +G P +S+ S D
Sbjct: 343 GTPQPTLERLHVGHPTLSLHSDD 365
>08_02_0567 + 18769742-18769790,18769928-18771351
Length = 490
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Frame = +3
Query: 339 MRGAFGKPQG--TVARVRIGQPIMSVRSSDRW-KAQVIEALRRAKFKFPGRQKI 491
MR G+ G A +RI + I + ++++ +AQV+EA RR F+ PGR ++
Sbjct: 24 MRTNGGEQMGGSEAAHIRIDEIIRRLDAAEKEAQAQVVEA-RREIFRVPGRHRL 76
>06_02_0084 - 11547820-11548773
Length = 317
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +3
Query: 303 LSCAGADRLQTGMRGAFGK--PQGTVARVRIGQPIMSVRSSDRWK 431
L G DR Q GMRGA P RVR +P R +W+
Sbjct: 133 LGAGGGDRGQLGMRGAADGWWPDWRERRVRWRRPAWRERRGRQWR 177
>01_06_0212 + 27575406-27575604,27575723-27576241,27576371-27576387
Length = 244
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 512 PPLL*YVDL-LTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANTCYSTLRLAKRTTHP 336
PP+L L L+SGEL +G + D+ LPPV G G S+A S + +R P
Sbjct: 124 PPVLPPPALPLSSGELLIGASSPYDEPPLPPVHSRRG-AGRSSAVPRLSAPDIGRRYYEP 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,556,782
Number of Sequences: 37544
Number of extensions: 437993
Number of successful extensions: 1102
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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