Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2132
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   174   4e-44
U41273-3|AAA82455.2|  257|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF099927-2|AAZ32796.1|  116|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    27   8.6  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  174 bits (424), Expect = 4e-44
 Identities = 92/156 (58%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
 Frame = +3

Query: 60  GVPDPKNPYLSIWVRRERTG*RLFHLCVHF--GVRRI*TAELKRLLEAGRICCNKYLVKN 233
           GVPD K     +  +R       F  CVH     R   ++E    LEA RIC NKY+VKN
Sbjct: 25  GVPDAKIRIFDLGNKRANVD--TFPACVHMMSNEREHLSSEA---LEAARICANKYMVKN 79

Query: 234 CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVR 413
           CGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + S+R
Sbjct: 80  CGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFSMR 139

Query: 414 SSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFHK 521
             +      IEA RRAKFKFPGRQ I  S+KWGF K
Sbjct: 140 IKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTK 175



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 19/41 (46%), Positives = 28/41 (68%)
 Frame = +1

Query: 502 RSGGFTKYERDEFEKLREXGRLANDGCIVXYRPEHGPXDAW 624
           R  GFTK++R+++E++R  GRL +DG  V  + EHGP   W
Sbjct: 169 RKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209



 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 27/59 (45%), Positives = 34/59 (57%)
 Frame = +1

Query: 7   CXRXCKNKPYPKSKVLSGVXLIPRIRIFXFG*EESGPVDDFSTCACTLVSDEYEQLSSK 183
           C R  KNKPYPKS+   GV    +IRIF  G  +   VD F  C   ++S+E E LSS+
Sbjct: 8   CYRYIKNKPYPKSRFCRGVP-DAKIRIFDLG-NKRANVDTFPACV-HMMSNEREHLSSE 63


>U41273-3|AAA82455.2|  257|Caenorhabditis elegans Hypothetical
           protein C26B9.3 protein.
          Length = 257

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 33  VSEIEGSVGGVPDPKNPYL 89
           ++E+E  +GG PDP NP L
Sbjct: 87  IAEVEMRIGGTPDPNNPSL 105


>Z66511-7|CAD57693.1|  567|Caenorhabditis elegans Hypothetical
           protein F07A11.6d protein.
          Length = 567

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 512 PPLL*YVDLLTSGELELGTAQSLDDLC-LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHP 336
           PP    VDL    + +L  AQ+      +P VT A   + LSN  T  ST  LA   T  
Sbjct: 19  PPATSTVDLAAMLQ-QLQAAQAAQAAQQVPVVTTASTPNPLSNLETLLSTASLANLATGG 77

Query: 335 SLEPISSSA 309
           +L P+S  A
Sbjct: 78  ALNPLSMLA 86


>AF099927-2|AAZ32796.1|  116|Caenorhabditis elegans Hypothetical
           protein T04C4.1c protein.
          Length = 116

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 212 AADTSCLQKPFELSCSYSSDTKVHAQVEKSSTGPL 108
           AA ++ L  PF LS SYS D  + A    SST P+
Sbjct: 45  AAPSTSLSPPF-LSPSYSMDYIIEAMTSSSSTSPV 78


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 212 AADTSCLQKPFELSCSYSSDTKVHAQVEKSSTGPL 108
           AA ++ L  PF LS SYS D  + A    SST P+
Sbjct: 45  AAPSTSLSPPF-LSPSYSMDYIIEAMTSSSSTSPV 78


>Z81055-1|CAB02889.1|  618|Caenorhabditis elegans Hypothetical
           protein F01G10.1 protein.
          Length = 618

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 342 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 488
           R   GKP   +A+   G+ I  + + D W  + +    +   K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 361 GLPNAPRIPVWSLSAPA 311
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>Z34801-2|CAD82919.1|  884|Caenorhabditis elegans Hypothetical
           protein F59A2.1b protein.
          Length = 884

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 154 TPKCTHKWKSRQPVRSLLTQXERYGFLGSGTPPTEPSI 41
           TPK T  + +  P +  L Q  ++G   SG+P T  SI
Sbjct: 509 TPKVTFGFGASAPAKEPLAQTSQFGGSLSGSPSTSSSI 546


>Z34801-1|CAA84330.1|  860|Caenorhabditis elegans Hypothetical
           protein F59A2.1a protein.
          Length = 860

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 154 TPKCTHKWKSRQPVRSLLTQXERYGFLGSGTPPTEPSI 41
           TPK T  + +  P +  L Q  ++G   SG+P T  SI
Sbjct: 485 TPKVTFGFGASAPAKEPLAQTSQFGGSLSGSPSTSSSI 522


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 382 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 489
           F+LDSP+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,830,218
Number of Sequences: 27780
Number of extensions: 346736
Number of successful extensions: 898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)