Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2128
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 53 2e-07
02_04_0592 - 24171698-24172285 46 3e-05
03_01_0608 + 4471738-4472115 29 2.4
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765... 29 3.2
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 29 4.2
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 29 4.2
10_01_0334 - 3680612-3681266,3682253-3682374 28 7.4
12_01_1010 - 10280424-10282003,10283359-10283668,10283749-102839... 27 9.8
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061 27 9.8
02_05_0098 - 25807993-25808193,25808629-25808710,25808891-258089... 27 9.8
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 52.8 bits (121), Expect = 2e-07
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +1
Query: 130 YQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKYIEGTAKLTDDA 303
Y G WYEI+ FP+ + ++G + A Y L GD VKV N DG + +IEGTA D
Sbjct: 12 YMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGHIEGTAYRADPV 71
Query: 304 NKAAKLTVTF 333
+ AKL V F
Sbjct: 72 SDEAKLKVKF 81
>02_04_0592 - 24171698-24172285
Length = 195
Score = 45.6 bits (103), Expect = 3e-05
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = +1
Query: 130 YQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKVKN-VHIIDGVKKYIEGTAKLTD 297
Y G WYEI+ PN + ++G+ + A Y L +G V V N G + YI+GTA D
Sbjct: 25 YMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDVLNETWTSSGKRDYIKGTAYKAD 84
Query: 298 DANKAAKLTVTF 333
A+ AKL V F
Sbjct: 85 PASDEAKLKVKF 96
>03_01_0608 + 4471738-4472115
Length = 125
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 505 RQQFXXRLQASCX*RGSRRTLDETFSCHRICSCKR 401
R+ RL+A+ RG ++ DE F C R+C+ KR
Sbjct: 27 RRDEEQRLKAA---RGREKSSDEVFVCERVCTSKR 58
>08_02_1423 +
26975466-26975508,26976253-26976365,26976505-26976561,
26976607-26976801,26976912-26977060,26977145-26977307,
26977865-26977957,26978075-26978158,26978865-26979004,
26979093-26979192
Length = 378
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +1
Query: 160 FPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTA-KLTDDANKAAKLTVTFK 336
F S G EY+ E V +V +G+KK ++G A K +D+ L
Sbjct: 209 FAEPSGTEGTEEEGEYEDESIVHHTASVGDDEGLKKALDGGADKDEEDSEGRRALHFACG 268
Query: 337 FGEISRDGSVQV 372
+GE+S D ++ +
Sbjct: 269 YGEVSNDKNISL 280
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 89 PELKPVNNFQLDSFTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 232
P LK + + K G +SRN+ N+R +AL +++ W R
Sbjct: 327 PTLKKPPTYLSNLMCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 89 PELKPVNNFQLDSFTKASGMKSRNFPTNLRRTANALQLNTNWKVTW*R 232
P LK + + K G +SRN+ N+R +AL +++ W R
Sbjct: 327 PTLKKPPTYLSNLMCKEKGKRSRNYMDNIRFIVDALACIIQYRLDWIR 374
>10_01_0334 - 3680612-3681266,3682253-3682374
Length = 258
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 228 EGQERAYHRRRQEVYRRDGQAHRRRQ*SRKAN 323
EGQE+A RRR R+ QA R R+ KA+
Sbjct: 39 EGQEKATQRRRAARMRQRQQAARGREDGEKAS 70
>12_01_1010 -
10280424-10282003,10283359-10283668,10283749-10283939,
10283967-10284279
Length = 797
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 145 YEISKFPNESEKNGKCSSAEYKLEG-DVVKVKNVHIIDGVKKYIEGTAKLTDDANKAAK 318
YE+S++ SEK G S A L G KV+N+ +D +K +E + + A+
Sbjct: 200 YELSEYKPLSEKIGSVSGAILILVGLSSSKVENLLTVDRAEKTLENLESCEKNVRQMAE 258
>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
Length = 691
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 166 NESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDD 300
N+ K GK + Y L+ + +H+I G+ + G TDD
Sbjct: 476 NKICKKGKAALHRYSLQNNEPGGYELHVICGMNNLVSGPVYCTDD 520
>02_05_0098 -
25807993-25808193,25808629-25808710,25808891-25808978,
25809062-25809133,25809388-25809556
Length = 203
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 401 SLTTANTMTRKSLIKCSSGSSLXTRSLKATLKLLSIISSRNTPK 532
+L T R+SLIK + +A+ KLL IIS NT K
Sbjct: 83 ALAKVETDKRESLIKAWEENEKAKAENRASKKLLDIISWENTKK 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,112,172
Number of Sequences: 37544
Number of extensions: 256955
Number of successful extensions: 780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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